Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY16_RS19315 Genome accession   NZ_CP053802
Coordinates   187816..188676 (-) Length   286 a.a.
NCBI ID   WP_367889859.1    Uniprot ID   -
Organism   Vibrio cholerae strain L6G     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182816..193676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS00875 (HPY16_00875) gspL 183074..184285 (+) 1212 WP_032471731.1 type II secretion system protein GspL -
  HPY16_RS00880 (HPY16_00880) gspM 184295..184792 (+) 498 WP_000661339.1 type II secretion system protein M -
  HPY16_RS00885 (HPY16_00885) - 184794..185552 (+) 759 WP_175247914.1 type II secretion system protein N -
  HPY16_RS00890 (HPY16_00890) cysQ 185604..186431 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY16_RS00895 (HPY16_00895) nudE 186454..187002 (-) 549 WP_175247915.1 ADP compounds hydrolase NudE -
  HPY16_RS00900 (HPY16_00900) nfuA 187141..187728 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY16_RS19315 comF 187816..188676 (-) 861 WP_367889859.1 ComF family protein Machinery gene
  HPY16_RS00915 (HPY16_00915) bioH 188612..189373 (+) 762 WP_175248302.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY16_RS00920 (HPY16_00920) - 189530..190000 (+) 471 WP_000961396.1 hypothetical protein -
  HPY16_RS00925 (HPY16_00925) - 190095..192416 (-) 2322 WP_175247916.1 Tex family protein -
  HPY16_RS00930 (HPY16_00930) greB 192661..193146 (+) 486 WP_175247917.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32664.75 Da        Isoelectric Point: 8.3605

>NTDB_id=447532 HPY16_RS19315 WP_367889859.1 187816..188676(-) (comF) [Vibrio cholerae strain L6G]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIRSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLSQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHLPKHQ
RIAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=447532 HPY16_RS19315 WP_367889859.1 187816..188676(-) (comF) [Vibrio cholerae strain L6G]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCGCTCAGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCGCTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGATCAGTGCGGGCAGTGTTTGAGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTGCTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGCGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCAC
ATCAACAAGGACTCAGTAAGGCACAGCGCATACACAACTTACGCGATGCGTTTGTGCTCAATCATTTACCGAAACATCAA
CGCATTGCGATTGTGGACGATGTTGTGACCACAGGCAGCACGATCCGACATTTATGTGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

96.154

100

0.962
  comF Vibrio campbellii strain DS40M4

45.798

83.217

0.381