Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY15_RS18750 Genome accession   NZ_CP053800
Coordinates   188411..189271 (-) Length   286 a.a.
NCBI ID   WP_080341942.1    Uniprot ID   -
Organism   Vibrio cholerae strain SO5Y     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183411..194271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS00875 (HPY15_00875) gspL 183669..184880 (+) 1212 WP_175235499.1 type II secretion system protein GspL -
  HPY15_RS00880 (HPY15_00880) gspM 184890..185387 (+) 498 WP_175235501.1 type II secretion system protein M -
  HPY15_RS00885 (HPY15_00885) - 185389..186147 (+) 759 WP_175235503.1 type II secretion system protein N -
  HPY15_RS00890 (HPY15_00890) cysQ 186199..187026 (-) 828 WP_033931432.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY15_RS00895 (HPY15_00895) nudE 187049..187597 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  HPY15_RS00900 (HPY15_00900) nfuA 187736..188323 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY15_RS18750 comF 188411..189271 (-) 861 WP_080341942.1 ComF family protein Machinery gene
  HPY15_RS00915 (HPY15_00915) bioH 189207..189968 (+) 762 WP_046125992.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY15_RS00920 (HPY15_00920) - 190213..190683 (+) 471 WP_000961393.1 hypothetical protein -
  HPY15_RS00925 (HPY15_00925) - 190778..193099 (-) 2322 WP_175235505.1 Tex family protein -
  HPY15_RS00930 (HPY15_00930) greB 193344..193826 (+) 483 WP_000850492.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32512.46 Da        Isoelectric Point: 8.0588

>NTDB_id=447485 HPY15_RS18750 WP_080341942.1 188411..189271(-) (comF) [Vibrio cholerae strain SO5Y]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=447485 HPY15_RS18750 WP_080341942.1 188411..189271(-) (comF) [Vibrio cholerae strain SO5Y]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
CTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTACTCACCCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCGCGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.951

100

0.99
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388