Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   HPY15_RS08385 Genome accession   NZ_CP053800
Coordinates   1861781..1862368 (-) Length   195 a.a.
NCBI ID   WP_001005365.1    Uniprot ID   -
Organism   Vibrio cholerae strain SO5Y     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1856781..1867368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS08365 (HPY15_08380) - 1857007..1858272 (-) 1266 WP_001961413.1 YdgA family protein -
  HPY15_RS08370 (HPY15_08385) - 1858495..1860450 (+) 1956 WP_033928359.1 ATP-binding protein -
  HPY15_RS08375 (HPY15_08390) - 1860447..1860944 (+) 498 WP_001031964.1 response regulator -
  HPY15_RS08380 (HPY15_08395) - 1861135..1861683 (+) 549 WP_001232641.1 hypothetical protein -
  HPY15_RS08385 (HPY15_08400) tfoX 1861781..1862368 (-) 588 WP_001005365.1 TfoX/Sxy family DNA transformation protein Regulator
  HPY15_RS08390 (HPY15_08405) - 1862746..1863666 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  HPY15_RS08395 (HPY15_08410) - 1863687..1864592 (+) 906 WP_046126618.1 lysine exporter LysO family protein -
  HPY15_RS08400 (HPY15_08415) - 1864781..1865290 (+) 510 WP_000826868.1 hypothetical protein -
  HPY15_RS08405 (HPY15_08420) panP 1865400..1867046 (+) 1647 WP_046126617.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22817.01 Da        Isoelectric Point: 6.6463

>NTDB_id=447467 HPY15_RS08385 WP_001005365.1 1861781..1862368(-) (tfoX) [Vibrio cholerae strain SO5Y]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCEQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=447467 HPY15_RS08385 WP_001005365.1 1861781..1862368(-) (tfoX) [Vibrio cholerae strain SO5Y]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGAGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGCGAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

99.487

100

0.995
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

99.487

100

0.995
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

99.487

100

0.995
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

99.487

100

0.995
  tfoX Vibrio cholerae strain A1552

99.487

100

0.995
  tfoX Vibrio campbellii strain DS40M4

69.948

98.974

0.692
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

59.043

96.41

0.569