Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   M3Q_RS00830 Genome accession   NC_018706
Coordinates   182518..183783 (-) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii TYTH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 177518..188783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3Q_RS00800 (M3Q_162) pncA 177740..178384 (-) 645 WP_000783437.1 bifunctional nicotinamidase/pyrazinamidase -
  M3Q_RS00805 (M3Q_163) dapA 178714..179607 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  M3Q_RS00810 (M3Q_164) - 179623..180225 (+) 603 WP_001177091.1 hypothetical protein -
  M3Q_RS00815 (M3Q_165) purC 180262..180981 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  M3Q_RS00820 (M3Q_166) - 181174..181377 (+) 204 WP_000418560.1 hypothetical protein -
  M3Q_RS00825 (M3Q_167) - 181663..182502 (+) 840 WP_000349492.1 formate/nitrite transporter family protein -
  M3Q_RS00830 (M3Q_168) rarA 182518..183783 (-) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  M3Q_RS00835 (M3Q_169) - 183889..185061 (-) 1173 WP_000986272.1 PQQ-dependent sugar dehydrogenase -
  M3Q_RS00840 (M3Q_170) - 185171..185629 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  M3Q_RS00845 (M3Q_171) - 185824..185982 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  M3Q_RS00850 (M3Q_172) - 186154..186891 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  M3Q_RS00855 (M3Q_173) - 187077..187439 (+) 363 WP_000130110.1 HIT family protein -
  M3Q_RS00860 (M3Q_174) mutY 187580..188614 (+) 1035 WP_001113868.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=44740 M3Q_RS00830 WP_001285409.1 182518..183783(-) (rarA) [Acinetobacter baumannii TYTH-1]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=44740 M3Q_RS00830 WP_001285409.1 182518..183783(-) (rarA) [Acinetobacter baumannii TYTH-1]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATCATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGATTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGTGCGACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTTTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATTAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGATATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387

Multiple sequence alignment