Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HPY13_RS01305 Genome accession   NZ_CP053796
Coordinates   279328..279846 (+) Length   172 a.a.
NCBI ID   WP_000792032.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL4G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274328..284846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS01285 (HPY13_01285) - 274545..277022 (-) 2478 WP_000668742.1 penicillin-binding protein 1A -
  HPY13_RS01290 (HPY13_01290) pilM 277165..278181 (+) 1017 WP_094392825.1 type IV pilus assembly protein PilM Machinery gene
  HPY13_RS01295 (HPY13_01295) pilN 278171..278755 (+) 585 WP_000902746.1 PilN domain-containing protein Machinery gene
  HPY13_RS01300 (HPY13_01300) pilO 278748..279338 (+) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  HPY13_RS01305 (HPY13_01305) pilP 279328..279846 (+) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  HPY13_RS01310 (HPY13_01310) pilQ 279872..281587 (+) 1716 WP_162298794.1 type IV pilus secretin PilQ Machinery gene
  HPY13_RS01315 (HPY13_01315) aroK 281774..282298 (+) 525 WP_000818616.1 shikimate kinase AroK -
  HPY13_RS01320 (HPY13_01320) aroB 282326..283411 (+) 1086 WP_000439809.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19084.25 Da        Isoelectric Point: 10.0857

>NTDB_id=447358 HPY13_RS01305 WP_000792032.1 279328..279846(+) (pilP) [Vibrio cholerae strain SL4G]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447358 HPY13_RS01305 WP_000792032.1 279328..279846(+) (pilP) [Vibrio cholerae strain SL4G]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTAGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAACGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATTAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

100

100

1
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564