Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY12_RS18900 Genome accession   NZ_CP053794
Coordinates   187762..188622 (-) Length   286 a.a.
NCBI ID   WP_080387086.1    Uniprot ID   -
Organism   Vibrio cholerae strain W10G     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182762..193622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY12_RS00880 (HPY12_00880) gspL 183020..184231 (+) 1212 WP_001288747.1 type II secretion system protein GspL -
  HPY12_RS00885 (HPY12_00885) gspM 184241..184738 (+) 498 WP_000661339.1 type II secretion system protein M -
  HPY12_RS00890 (HPY12_00890) - 184740..185498 (+) 759 WP_057568673.1 type II secretion system protein N -
  HPY12_RS00895 (HPY12_00895) cysQ 185550..186377 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY12_RS00900 (HPY12_00900) nudE 186400..186948 (-) 549 WP_057568674.1 ADP compounds hydrolase NudE -
  HPY12_RS00905 (HPY12_00905) nfuA 187087..187674 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY12_RS18900 comF 187762..188622 (-) 861 WP_080387086.1 ComF family protein Machinery gene
  HPY12_RS00920 (HPY12_00920) bioH 188558..189319 (+) 762 WP_032469467.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY12_RS00925 (HPY12_00925) - 189481..189951 (+) 471 WP_000961393.1 hypothetical protein -
  HPY12_RS00930 (HPY12_00930) - 190045..192366 (-) 2322 WP_000030094.1 Tex family protein -
  HPY12_RS00935 (HPY12_00935) greB 192611..193093 (+) 483 WP_001965872.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32532.45 Da        Isoelectric Point: 8.1655

>NTDB_id=447343 HPY12_RS18900 WP_080387086.1 187762..188622(-) (comF) [Vibrio cholerae strain W10G]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTLECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTSVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INQPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=447343 HPY12_RS18900 WP_080387086.1 187762..188622(-) (comF) [Vibrio cholerae strain W10G]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCTGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCTC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTACATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACCAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGGCTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.252

100

0.983
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392