Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   GE021_RS11105 Genome accession   NZ_CP053792
Coordinates   54129..54230 (+) Length   33 a.a.
NCBI ID   WP_217267493.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_1     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49129..59230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS00290 (GE021_000290) purE 49634..50125 (+) 492 WP_125074315.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GE021_RS00295 (GE021_000295) purK 50112..51182 (+) 1071 WP_125074314.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GE021_RS00300 (GE021_000300) purB 51700..52992 (+) 1293 WP_003046005.1 adenylosuccinate lyase -
  GE021_RS00305 (GE021_000305) comR 53131..54042 (+) 912 WP_125074313.1 helix-turn-helix domain-containing protein Regulator
  GE021_RS11105 comS 54129..54230 (+) 102 WP_217267493.1 quorum-sensing system DWW-type pheromone Regulator
  GE021_RS00310 (GE021_000310) ruvB 54263..55261 (+) 999 WP_125074312.1 Holliday junction branch migration DNA helicase RuvB -
  GE021_RS00315 (GE021_000315) - 55403..55846 (+) 444 WP_125074311.1 low molecular weight protein-tyrosine-phosphatase -
  GE021_RS00320 (GE021_000320) - 55863..56264 (+) 402 WP_125074310.1 MORN repeat-containing protein -
  GE021_RS00325 (GE021_000325) - 56261..58036 (+) 1776 WP_164406344.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 33 a.a.        Molecular weight: 3962.88 Da        Isoelectric Point: 10.7919

>NTDB_id=447302 GE021_RS11105 WP_217267493.1 54129..54230(+) (comS) [Streptococcus canis strain HL_77_1]
MMFKKFKPFLLLAAVIAFKVARVMNEFDWWNLG

Nucleotide


Download         Length: 102 bp        

>NTDB_id=447302 GE021_RS11105 WP_217267493.1 54129..54230(+) (comS) [Streptococcus canis strain HL_77_1]
ATGATGTTTAAAAAATTCAAACCATTTTTGTTATTAGCTGCGGTAATTGCTTTTAAAGTAGCTCGTGTGATGAATGAATT
TGATTGGTGGAATCTAGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

87.5

96.97

0.848
  comS Streptococcus pyogenes MGAS8232

41.935

93.939

0.394