Detailed information NTG0447292

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: ST4052_RS06515
• Genome accession: NZ_CP065476
• Coordinates: 1255717..1256643 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: Q5M3H5
• Organism: Streptococcus thermophilus strain 4052
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1250717..1261643

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST4052_RS06485 (ST4052_06560)	-	1250796..1251590 (-)	795	WP_059257398.1	HAD family hydrolase	-
ST4052_RS06490 (ST4052_06565)	-	1251773..1252150 (+)	378	WP_011226300.1	GntR family transcriptional regulator	-
ST4052_RS06495 (ST4052_06570)	-	1252155..1252853 (+)	699	WP_011226301.1	ABC transporter ATP-binding protein	-
ST4052_RS06500 (ST4052_06575)	-	1252865..1253650 (+)	786	WP_002951425.1	hypothetical protein	-
ST4052_RS06505 (ST4052_06580)	-	1253700..1254629 (-)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	-
ST4052_RS06510 (ST4052_06585)	amiE	1254622..1255707 (-)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
ST4052_RS06515 (ST4052_06590)	amiD	1255717..1256643 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
ST4052_RS06520 (ST4052_06595)	amiC	1256643..1258136 (-)	1494	WP_011227407.1	ABC transporter permease	Regulator
ST4052_RS06525 (ST4052_06600)	amiA	1258198..1260165 (-)	1968	WP_347100844.1	peptide ABC transporter substrate-binding protein	Regulator
ST4052_RS06530 (ST4052_06605)	-	1260369..1260559 (-)	191	Protein_1231	IS3 family transposase	-
ST4052_RS06535	-	1260553..1260954 (-)	402	Protein_1232	ABC transporter ATP-binding protein	-
ST4052_RS06540 (ST4052_06620)	-	1260949..1261309 (-)	361	Protein_1233	TatD family hydrolase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=447292 ST4052_RS06515 WP_002946409.1 1255717..1256643(-) (amiD) [Streptococcus thermophilus strain 4052]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=447292 ST4052_RS06515 WP_002946409.1 1255717..1256643(-) (amiD) [Streptococcus thermophilus strain 4052]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

3D structure

• AlphaFold DB: Q5M3H5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964