Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   I5593_RS05910 Genome accession   NZ_CP065432
Coordinates   1254954..1256711 (+) Length   585 a.a.
NCBI ID   WP_001020904.1    Uniprot ID   A0ABX6CHL3
Organism   Acinetobacter baumannii strain ATCC 17961     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1249954..1261711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5593_RS05890 (I5593_05890) - 1250852..1251721 (+) 870 WP_000117601.1 PhzF family phenazine biosynthesis protein -
  I5593_RS05895 (I5593_05895) - 1251776..1252555 (-) 780 WP_000718711.1 ferredoxin--NADP reductase -
  I5593_RS05900 (I5593_05900) tsaA 1252660..1253388 (+) 729 WP_001985377.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  I5593_RS05905 (I5593_05905) - 1253398..1254666 (-) 1269 WP_001052941.1 DUF4010 domain-containing protein -
  I5593_RS05910 (I5593_05910) pilB 1254954..1256711 (+) 1758 WP_001020904.1 GspE/PulE family protein Machinery gene
  I5593_RS05915 (I5593_05915) - 1256793..1257152 (+) 360 WP_000783088.1 NirD/YgiW/YdeI family stress tolerance protein -
  I5593_RS05920 (I5593_05920) - 1257260..1257922 (+) 663 WP_001221450.1 response regulator transcription factor -
  I5593_RS05925 (I5593_05925) - 1257919..1259277 (+) 1359 WP_001257358.1 cell wall metabolism sensor histidine kinase WalK -
  I5593_RS05930 (I5593_05930) hemP 1259343..1259513 (-) 171 WP_000993415.1 hemin uptake protein HemP -
  I5593_RS05935 (I5593_05935) - 1259650..1260549 (+) 900 WP_001125745.1 NUDIX domain-containing protein -
  I5593_RS05940 (I5593_05940) - 1260571..1261122 (-) 552 WP_000913437.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66858.64 Da        Isoelectric Point: 6.9455

>NTDB_id=447183 I5593_RS05910 WP_001020904.1 1254954..1256711(+) (pilB) [Acinetobacter baumannii strain ATCC 17961]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDEDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPHCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIVGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=447183 I5593_RS05910 WP_001020904.1 1254954..1256711(+) (pilB) [Acinetobacter baumannii strain ATCC 17961]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATCTAA
AAGACCAACACCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGAATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAGGCGCTTTTACA
ACTTGGTGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTGGTCGACTGGATATTGCAATTTGCATTTG
AACAGAGCGCCAGTGACATTCACATGGAACCGCGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAATATGCCTTCAAATACTCTGACCGCCGTGATTTCTCGGATTAAAATTTTAGGGCGGCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGTTTAAAAACACGTACGCCGAAAGGACAAGAAACCGAGCTACGTTTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTGTTAGTACGTTCCTTTCAGCAATTGGGTTTT
GACCAGTCTTTATTACAACAATGGCAGCGTATTACACAAAATAGTCACGGCATTATTTTAGTTACGGGGCCAACAGGTTC
TGGTAAAACTACAACGCTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTTAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACGAAGATACTGCGAATATGGCCATTCAAGCTGC
ACTCACAGGCCATTTGGTATTATCAACTTTACATACCAATGATGCGCCGTCTAGTTTGACCCGTTTACATGATTTAGGTG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTAGCGCAGCGCTTAGTGCGTAAGCTTTGCCCGCACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCTGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGTAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTGCTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)

Type II/IV secretion system protein (T2SSE)

(209-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.162

100

0.376