Detailed information NTG0447181

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: GE023_RS09160
• Genome accession: NZ_CP053789
• Coordinates: 1856201..1857133 (-)
• Length: 310 a.a.
• NCBI ID: WP_159305283.1
• Uniprot ID: -
• Organism: Streptococcus canis strain HL_98_2
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1851201..1862133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE023_RS09135 (GE023_009130)	tsaD	1851688..1852704 (-)	1017	WP_159305282.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
GE023_RS09140 (GE023_009135)	rimI	1852694..1853119 (-)	426	WP_093999470.1	ribosomal protein S18-alanine N-acetyltransferase	-
GE023_RS09145 (GE023_009140)	tsaB	1853121..1853819 (-)	699	WP_003045253.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
GE023_RS09150 (GE023_009145)	-	1854104..1854334 (+)	231	WP_164401702.1	DNA-dependent RNA polymerase subunit epsilon	-
GE023_RS09155 (GE023_009150)	rnjA	1854336..1856018 (+)	1683	WP_164406234.1	ribonuclease J1	-
GE023_RS09160 (GE023_009155)	amiF	1856201..1857133 (-)	933	WP_159305283.1	ABC transporter ATP-binding protein	Regulator
GE023_RS09165 (GE023_009160)	oppD	1857130..1858179 (-)	1050	WP_159305284.1	ABC transporter ATP-binding protein	Regulator
GE023_RS09170 (GE023_009165)	-	1858191..1859222 (-)	1032	WP_093999474.1	ABC transporter permease	-
GE023_RS09175 (GE023_009170)	-	1859232..1860146 (-)	915	WP_164401727.1	ABC transporter permease	-
GE023_RS11090	-	1860384..1860827 (+)	444	Protein_1768	transposase	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35178.08 Da
• Isoelectric Point: 6.9395

>NTDB_id=447181 GE023_RS09160 WP_159305283.1 1856201..1857133(-) (amiF) [Streptococcus canis strain HL_98_2]
MNDNRKKLVALKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTTSKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKCLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEADHYRRDYR

Nucleotide

• Length: 933 bp

>NTDB_id=447181 GE023_RS09160 WP_159305283.1 1856201..1857133(-) (amiF) [Streptococcus canis strain HL_98_2]
ATGAATGACAATCGAAAAAAATTAGTAGCCTTAAAAAATGTCTCCCTAACTTTCAATAAAGGCAAGAAAAACGAAGTTAA
GGCTATTGATAACGTTAGTTTTGATATTTATGAAGGCGAAGTCTTTGGACTGGTGGGGGAATCAGGGTCAGGGAAAACAA
CAGTTGGCCGTGCGATTCTGAAACTTTATGATATTAGTGAAGGAGAAATCATTTTTAATGGTGAAACTGTTTCTCACCTG
AAAGGTAAAGACTTGCGGACCTTCCGTAAGGATGCCCAAATGATTTTCCAAGACCCTCAGGCCAGTCTCAATGGTCGTAT
GAAAATTAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGCCTGACAACTTCAAAAGCAGAGCGAGAAGAGCGGGTGC
AAGAACTCCTTGACTTGGTTGGATTGAATAAGGACCATTTAACCCGTTACCCGCATGAATTTTCAGGAGGGCAACGTCAG
CGGATTGGGATTGCCCGCGCTTTGGCGGTTAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
CATTCAGGCACAGGTGGTTAATTTGATGCAAAAACTTCAGCACAAACGTGGCTTGACCTATCTCTTTATTGCTCATGACT
TGTCCATGGTTAAATACATTTCTGACCGTATTGGCGTCATGCATTGGGGCAAAATGTTGGAGATTGGGACATCAGATGAT
GTTTACAATCATCCCATTCACCCCTACACCAAGTGTCTGCTTTCGGCTATTCCTGAGCCAGATCCTGACAAAGAACGGCA
ACGTGTGGCTGATGTTTACGACCCTAGTCAAGAATTGGACGGTCAGGAGCGCCAAATGCACGAAATTACCCCAGGGCATT
TTGTTTTAGCTACCCAAGAAGAAGCTGACCATTATCGACGTGACTATCGTTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.443	98.387	0.526
amiF	Streptococcus thermophilus LMG 18311	53.115	98.387	0.523
amiF	Streptococcus salivarius strain HSISS4	52.787	98.387	0.519