Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I5W22_RS04940 Genome accession   NZ_CP065431
Coordinates   1008905..1010647 (-) Length   580 a.a.
NCBI ID   WP_012028203.1    Uniprot ID   A0A0H3N3X1
Organism   Streptococcus suis strain YP20190405     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003905..1015647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5W22_RS04915 (I5W22_04915) - 1004565..1005107 (-) 543 WP_012775148.1 hypothetical protein -
  I5W22_RS04920 (I5W22_04920) - 1005253..1005597 (-) 345 WP_012028202.1 hypothetical protein -
  I5W22_RS04925 (I5W22_04925) - 1005728..1006528 (+) 801 WP_012027034.1 helix-turn-helix domain-containing protein -
  I5W22_RS04930 (I5W22_04930) mutY 1007191..1008351 (-) 1161 WP_014917249.1 A/G-specific adenine glycosylase -
  I5W22_RS04935 (I5W22_04935) - 1008529..1008921 (-) 393 WP_012027036.1 PaaI family thioesterase -
  I5W22_RS04940 (I5W22_04940) rcrQ 1008905..1010647 (-) 1743 WP_012028203.1 ABC transporter ATP-binding protein Regulator
  I5W22_RS04945 (I5W22_04945) - 1010634..1012373 (-) 1740 WP_012027039.1 ABC transporter ATP-binding protein -
  I5W22_RS04950 (I5W22_04950) pta 1012375..1013349 (-) 975 WP_012775151.1 phosphate acetyltransferase -
  I5W22_RS04955 (I5W22_04955) - 1013367..1014260 (-) 894 WP_012027041.1 RluA family pseudouridine synthase -
  I5W22_RS04960 (I5W22_04960) - 1014260..1015078 (-) 819 WP_012775152.1 NAD kinase -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64404.47 Da        Isoelectric Point: 5.3459

>NTDB_id=447108 I5W22_RS04940 WP_012028203.1 1008905..1010647(-) (rcrQ) [Streptococcus suis strain YP20190405]
MRQSSFKELVRLVLHQPLRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANGQVLLGILGKMVMVILLNTLVQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRQSVGDLVARFSSDSEQLTNGLLMIFNQFFIGISTIFLTIFTMARLDLTMM
LVVVALTPVSLLVARYIAKKSYGYYRQQTQARGRQSQLLEESISQLTLVQSFNAQEQFTQGFQVVNDQYATYSQQAIFAS
STVNPSTRFVNAIIYALLAGLGALRIMAGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAERKIDSEELKGAISFDNVSFSYSPERSLIEHLDIAVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQIVLDGVPI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=447108 I5W22_RS04940 WP_012028203.1 1008905..1010647(-) (rcrQ) [Streptococcus suis strain YP20190405]
ATGAGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTCTACACCAGCCCCTTCGAATGTCCTTGATGTTGGTGGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTTGATGCAGTATTGATAGCAAATGGTC
AGGTCTTGCTCGGTATCTTAGGCAAAATGGTGATGGTTATCTTGCTTAATACACTGGTGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTACGGAATGGTGGCCGACTTGCGTGAACAGGTCTATGTGAAGCTGCACCAGATGCCCTTATCTTA
TCTTGATCGTCAATCAGTCGGTGACTTGGTGGCTCGTTTTTCAAGTGATAGCGAGCAATTAACAAATGGTCTCTTGATGA
TTTTCAATCAATTTTTCATTGGTATCTCGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGGTTGTTGTTGCCCTGACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGGCA
ACAGACTCAGGCACGTGGGAGGCAATCTCAGCTTTTGGAAGAGTCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATGACCAGTATGCGACCTATTCCCAACAGGCTATCTTTGCCTCT
TCAACGGTCAATCCAAGTACTCGCTTTGTCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCGCTAAGAATTAT
GGCAGGAAATTTTACAGTGGGATCCCTGACAACCTTCCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGGCTGTTTGCTATCTTGGCTCTAGATAGCATTGAC
GACCAGGCTGAGCGGAAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGACAATGTGTCTTTCTCATATAGCCC
TGAACGTTCTCTGATAGAACATTTGGACATTGCTGTCAAAGCTGGACAAAAAGTAGCCATTGTTGGACCTACTGGTGCTG
GCAAATCAACCATGATTAACCTTCTTATGCGCTTCTACGATGTGACGGCTGGTCAGATTGTCTTAGATGGGGTTCCGATT
AGCCAGTATAGTCGTGAGGATCTTCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGACTTCT
TTATTCGTCAGCTTCCGCAGGGCTACGATACAGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTCAAGATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGTTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(354-501)

ABC transporter transmembrane region (ABC_membrane)

(22-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N3X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.977

97.759

0.381