Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   I5V48_RS06745 Genome accession   NZ_CP065430
Coordinates   1384470..1386206 (-) Length   578 a.a.
NCBI ID   WP_197315171.1    Uniprot ID   -
Organism   Streptococcus suis strain YZDH1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1379470..1391206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS06730 (I5V48_06730) - 1380320..1381606 (-) 1287 WP_043024918.1 homoserine dehydrogenase -
  I5V48_RS06735 (I5V48_06735) - 1381711..1382634 (+) 924 WP_197314998.1 polysaccharide deacetylase family protein -
  I5V48_RS06740 (I5V48_06740) rcrQ 1382692..1384461 (-) 1770 WP_172073071.1 ABC transporter ATP-binding protein Regulator
  I5V48_RS06745 (I5V48_06745) rcrP 1384470..1386206 (-) 1737 WP_197315171.1 ABC transporter ATP-binding protein Regulator
  I5V48_RS06750 (I5V48_06750) - 1386282..1386524 (-) 243 WP_002940680.1 KH domain-containing protein -
  I5V48_RS06755 (I5V48_06755) rpsP 1386546..1386818 (-) 273 WP_197314999.1 30S ribosomal protein S16 -
  I5V48_RS06760 (I5V48_06760) - 1386943..1387251 (-) 309 WP_015646885.1 DUF4298 domain-containing protein -
  I5V48_RS06765 (I5V48_06765) pcp 1387251..1387898 (-) 648 WP_043025527.1 pyroglutamyl-peptidase I -
  I5V48_RS06770 (I5V48_06770) - 1387895..1388650 (-) 756 WP_079269177.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65172.42 Da        Isoelectric Point: 5.1916

>NTDB_id=447018 I5V48_RS06745 WP_197315171.1 1384470..1386206(-) (rcrP) [Streptococcus suis strain YZDH1]
MNLIWTYLKKYPKWIALDLFGAFLFIVVNLGLPTFLARMIDQGITKNNVDQLYFWAGMMGLIVLLGIVGRVTLAYAAGQL
TTNIAKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQENRFAEVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALEPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=447018 I5V48_RS06745 WP_197315171.1 1384470..1386206(-) (rcrP) [Streptococcus suis strain YZDH1]
ATGAATCTGATTTGGACCTATTTGAAAAAATACCCAAAGTGGATTGCTTTGGACTTGTTCGGAGCTTTCCTATTCATTGT
AGTTAACTTGGGCTTGCCGACATTTTTGGCAAGAATGATTGACCAAGGGATTACAAAAAACAATGTTGATCAATTATATT
TCTGGGCAGGCATGATGGGTTTGATTGTTTTGCTCGGTATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGACAGTTG
ACAACCAATATCGCCAAGGATATTCGAAATGATCTGTACGAAAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTGCTGATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACCCCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCAAGTCTGGCTTGGACAGTAGCC
GTAGCCATGCCATTTTTGGTTTTCGTCATTTTTTATGTAGCTACTAAAACTCGACCTCTTTCTGAAAAACAACAGAAACG
ATTAGACACCATTAACCAGTATGTTCGTGAAAATCTTATGGGCTTGCGGGTCATTCGTGCCTTTACGCGTGAAGAGTTCC
AAGAAAACCGTTTTGCAGAGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCTATTGTCTGGTTTGCTTTGGAACCCTTGAAAACAGGCAGTTT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCACTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCTATCTCTATTTCTAAGAATGAA
GACGGCATAACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGTAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAACAGCCGGATATCTATATCTTTGATGACTCTTTCTCAGCCTTGGACTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCACAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAATGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.167

100

0.396