Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I5V48_RS05610 Genome accession   NZ_CP065430
Coordinates   1144485..1146227 (+) Length   580 a.a.
NCBI ID   WP_043025439.1    Uniprot ID   -
Organism   Streptococcus suis strain YZDH1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139485..1151227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS05590 (I5V48_05590) - 1140054..1140872 (+) 819 WP_002935241.1 NAD kinase -
  I5V48_RS05595 (I5V48_05595) - 1140872..1141765 (+) 894 WP_174850237.1 RluA family pseudouridine synthase -
  I5V48_RS05600 (I5V48_05600) pta 1141783..1142757 (+) 975 WP_002935239.1 phosphate acetyltransferase -
  I5V48_RS05605 (I5V48_05605) - 1142759..1144498 (+) 1740 WP_043025441.1 ABC transporter ATP-binding protein -
  I5V48_RS05610 (I5V48_05610) rcrQ 1144485..1146227 (+) 1743 WP_043025439.1 ABC transporter ATP-binding protein Regulator
  I5V48_RS05615 (I5V48_05615) - 1146211..1146603 (+) 393 WP_043025438.1 PaaI family thioesterase -
  I5V48_RS05620 (I5V48_05620) mutY 1146838..1147998 (+) 1161 WP_197315165.1 A/G-specific adenine glycosylase -
  I5V48_RS05625 (I5V48_05625) - 1148659..1149459 (-) 801 WP_043025434.1 helix-turn-helix domain-containing protein -
  I5V48_RS05630 (I5V48_05630) - 1149684..1150226 (+) 543 WP_024376577.1 hypothetical protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64502.53 Da        Isoelectric Point: 5.0043

>NTDB_id=447010 I5V48_RS05610 WP_043025439.1 1144485..1146227(+) (rcrQ) [Streptococcus suis strain YZDH1]
MRQASFKELVRLVLHQPLRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANSQVLLGILGKMVMVILLNTLVQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRQSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LVVVALTPVSLLVARYIAKKSYGYYRQQTQARGRQSQLLEESISQLTLIQSFNAQEQFTQGFQVVNDQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAERKIDSEELKGAISFENVSFSYSPERSLIEHLDIDVEAGQKVAIVGPTGAGKSTMINLLMHFYDVTAGQIVLDGVSI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=447010 I5V48_RS05610 WP_043025439.1 1144485..1146227(+) (rcrQ) [Streptococcus suis strain YZDH1]
ATGAGACAAGCTAGTTTTAAGGAACTGGTCAGATTGGTTTTACACCAGCCCCTTCGAATGTCCTTGATGCTGGTAGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTCGATGCAGTATTGATAGCAAATAGTC
AGGTCTTGCTCGGTATCTTAGGCAAAATGGTGATGGTTATCTTGCTTAATACGCTGGTGCAATGGTATCTCCCACTAGTA
ACCAATCGCTTGGTTTATGGAATGGTGGCCGACTTGCGTGAACAGGTCTATGTTAAGCTGCACCAGATGCCCCTATCTTA
TCTTGATCGTCAATCAGTCGGTGATTTGGTGGCTCGTTTTTCAAGTGATAGTGAGCAATTAACAAATGGTCTCTTGATGA
TTTTCAATCAATTTTTCATTGGTATCTTGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGACCATGATG
TTGGTTGTTGTTGCCCTGACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGGCA
ACAGACTCAGGCACGTGGGAGGCAATCTCAGCTTTTGGAAGAATCCATCAGTCAATTGACACTGATTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATGACCAGTATGCGACCTATTCCCAACAGGCTATCTTTGCCTCT
TCAACGGTCAATCCAAGTACGCGGTTTATCAATGCTATTATTTATGCTTTACTTGCAGGACTTGGAGCGCTGAGAATTAT
GGCAGGAAATTTTACAGTGGGATCCCTGACAACCTTCCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGGCTGTTTGCTATCTTGGCTCTAGATAGCATTGAC
GATCAGGCTGAGCGGAAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGAGAATGTATCTTTCTCATATAGCCC
TGAACGTTCTCTGATAGAACATCTGGACATTGATGTCGAAGCTGGACAAAAAGTAGCCATTGTTGGACCTACTGGTGCTG
GTAAATCAACCATGATTAACCTTCTTATGCATTTCTACGATGTGACGGCTGGTCAGATTGTCTTAGATGGTGTTTCGATT
AGCCAGTACAGTCGTGAGGATCTCCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGATTTCT
TTATTCGTCAGCTTCCACAGGGTTACGATACGGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTTAAAATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGTTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.095

97.759

0.372