Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HPQ66_RS07990 Genome accession   NZ_CP053764
Coordinates   1620671..1621450 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain B268     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615671..1626450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ66_RS07970 (HPQ66_07990) trmFO 1616358..1617665 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HPQ66_RS07975 (HPQ66_07995) xerC 1617735..1618652 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  HPQ66_RS07980 (HPQ66_08000) hslV 1618668..1619213 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  HPQ66_RS07985 (HPQ66_08005) hslU 1619221..1620633 (+) 1413 WP_255219919.1 HslU--HslV peptidase ATPase subunit -
  HPQ66_RS07990 (HPQ66_08010) codY 1620671..1621450 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HPQ66_RS07995 (HPQ66_08015) flgB 1621803..1622192 (+) 390 WP_172614689.1 flagellar basal body rod protein FlgB -
  HPQ66_RS08000 (HPQ66_08020) flgC 1622192..1622644 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  HPQ66_RS08005 (HPQ66_08025) fliE 1622655..1622975 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HPQ66_RS08010 (HPQ66_08030) fliF 1623018..1624628 (+) 1611 WP_101563016.1 flagellar basal-body MS-ring/collar protein FliF -
  HPQ66_RS08015 (HPQ66_08035) fliG 1624641..1625657 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HPQ66_RS08020 (HPQ66_08040) fliH 1625650..1626405 (+) 756 WP_094246938.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=446981 HPQ66_RS07990 WP_003154263.1 1620671..1621450(+) (codY) [Bacillus velezensis strain B268]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=446981 HPQ66_RS07990 WP_003154263.1 1620671..1621450(+) (codY) [Bacillus velezensis strain B268]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471