Detailed information NTG0446980

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: I5V48_RS01170
• Genome accession: NZ_CP065430
• Coordinates: 235227..237719 (-)
• Length: 830 a.a.
• NCBI ID: WP_174850265.1
• Uniprot ID: -
• Organism: Streptococcus suis strain YZDH1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 230227..242719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5V48_RS01140 (I5V48_01140)	-	230579..231208 (+)	630	WP_174850267.1	NAD(P)-dependent oxidoreductase	-
I5V48_RS01145 (I5V48_01145)	-	231304..232224 (+)	921	WP_174850266.1	1-phosphofructokinase family hexose kinase	-
I5V48_RS01150 (I5V48_01150)	-	232231..232452 (-)	222	Protein_195	transposase	-
I5V48_RS12300	-	232667..232738 (+)	72	WP_231640516.1	hypothetical protein	-
I5V48_RS01160 (I5V48_01160)	-	233008..234036 (+)	1029	WP_172045789.1	LPXTG cell wall anchor domain-containing protein	-
I5V48_RS01165 (I5V48_01165)	-	234450..235121 (-)	672	WP_099833222.1	hypothetical protein	-
I5V48_RS01170 (I5V48_01170)	recD/recD2/recDB	235227..237719 (-)	2493	WP_174850265.1	ATP-dependent RecD-like DNA helicase	Machinery gene
I5V48_RS01175 (I5V48_01175)	lepB	238245..238874 (-)	630	WP_174850264.1	signal peptidase I	-
I5V48_RS01180 (I5V48_01180)	rnhC	238885..239775 (-)	891	WP_174850263.1	ribonuclease HIII	-
I5V48_RS01185 (I5V48_01185)	-	239860..240843 (+)	984	WP_172045794.1	Gfo/Idh/MocA family protein	-
I5V48_RS01190 (I5V48_01190)	-	241331..242461 (+)	1131	WP_043027000.1	LysM peptidoglycan-binding domain-containing protein	-

Sequence

Protein

• Length: 830 a.a.
• Molecular weight: 93292.58 Da
• Isoelectric Point: 4.5664

>NTDB_id=446980 I5V48_RS01170 WP_174850265.1 235227..237719(-) (recD/recD2/recDB) [Streptococcus suis strain YZDH1]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSRKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAHELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELETMSSLTYDDIQKEAIIQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVSYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQDSKEALAEKVESKTATTTQTLPPTQPDRKEQVEAVKENNQQLSLLDQDQPEKTSAQPT
EYILTVDNLLTIDPMTGIEQADIEEFFRKI

Nucleotide

• Length: 2493 bp

>NTDB_id=446980 I5V48_RS01170 WP_174850265.1 235227..237719(-) (recD/recD2/recDB) [Streptococcus suis strain YZDH1]
ATGAACGAAGTGTATTTTACCGGCACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAACAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCCACTTCTGCTGGTCTGGTTAAGTATTTCTCCAGCGAGCATTTCAAGGGAATCGGTCGCAAAACGGCCGAAAAAAT
TGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGTCTATCCC
GCAAGAACATGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGCTGATCTTGGCAAAACTAGCTGAGTAT
GGTATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAATATAAAGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGCATGCTCTTTAGCCTCATCCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCTACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAACTGGACCCCGCTGCTGTTGCCCACGA
GTTAACAGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGATAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGACCCGCCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCGCAGACGTCGAGGCTGCC
ATAGCAGAGCTGGAAACCATGTCTTCCCTGACCTACGATGACATTCAAAAAGAAGCCATCATCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGAAAAACAACGGTTATCAACGGTATTATCGCCGTCTATGCCATCTTGC
ATAAGATTGACCTAACTCGCAACCGAGAAGAATGCCCTGTCCTTCTTGCCGCTCCAACTGGACGAGCAGCCAGACGAATG
AATGAGTTGACAGGTCTACCTTCCGCCACCATCCACCGCCACCTCGGTCTGGTAGAAGGACAAGAAGAATCCTACCGTGA
TGATTATTTGGATGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTCGACACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCCTCCCAAACCCAAGTTTTGATTGTTGGCGATGCGGAGCAATTACCTTCCGTCAGTCCCGGTCAGGTCCTTGCT
GACCTCTTGAAAATTGACAAGCTACCCAGCATCACTCTAGAGCGCATCTATCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGTCAGATTCGCCAAGGGGCTCTGCCGAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCCC
AAAACGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCTATCAAGTCGGGCATTCCTGCAAACGAAGTCCAA
ATCCTCGCTCCCATGTACCGTGGTGCAGCAGGTATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTCCATAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATCTAGTCAACGACGCCG
AGGCCAATGTCTTCAATGGTGATTTGGGCTACATCACCGACCTCCTGCCTGCCAAGTACACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGACGGTAGCGAGGTCTCCTATCCACGCAATGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTCGTCATCCTTCCCATCACGCGCACCAGCCACCGCATGCTCCAGCGTA
ACCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAACTCATCCTCCTAGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGCACCGTCCGCAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGATAGCAAGGAAGC
TTTAGCTGAAAAAGTCGAAAGCAAAACAGCTACAACCACGCAAACCCTGCCCCCTACTCAGCCAGACAGGAAAGAACAGG
TTGAAGCAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGACCAAGACCAGCCAGAAAAAACAAGTGCCCAACCCACA
GAATACATTTTGACTGTAGATAACCTACTAACCATCGACCCCATGACTGGCATAGAACAGGCAGATATTGAAGAATTTTT
CAGGAAAATATAA

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (663-710)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (575-645)

• AAA domain (AAA_30) (332-529)

• Helix-hairpin-helix domain (HHH_5) (97-145)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	41.361	92.048	0.381