Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPY04_RS19250 Genome accession   NZ_CP053744
Coordinates   201011..201871 (-) Length   286 a.a.
NCBI ID   WP_367889817.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA3G     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 196011..206871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY04_RS00930 (HPY04_00930) gspL 196269..197480 (+) 1212 WP_001288737.1 type II secretion system protein GspL -
  HPY04_RS00935 (HPY04_00935) gspM 197490..197987 (+) 498 WP_175249255.1 type II secretion system protein M -
  HPY04_RS00940 (HPY04_00940) - 197989..198747 (+) 759 WP_175248665.1 type II secretion system protein N -
  HPY04_RS00945 (HPY04_00945) cysQ 198799..199626 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPY04_RS00950 (HPY04_00950) nudE 199649..200197 (-) 549 WP_000095817.1 ADP compounds hydrolase NudE -
  HPY04_RS00955 (HPY04_00955) nfuA 200336..200923 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  HPY04_RS19250 comF 201011..201871 (-) 861 WP_367889817.1 phosphoribosyltransferase family protein Machinery gene
  HPY04_RS00970 (HPY04_00970) bioH 201807..202568 (+) 762 WP_175249256.1 pimeloyl-ACP methyl ester esterase BioH -
  HPY04_RS00975 (HPY04_00975) - 202817..203287 (+) 471 WP_000961393.1 hypothetical protein -
  HPY04_RS00980 (HPY04_00980) - 203382..205703 (-) 2322 WP_175248667.1 Tex family protein -
  HPY04_RS00985 (HPY04_00985) greB 205948..206430 (+) 483 WP_000850494.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32514.43 Da        Isoelectric Point: 7.9437

>NTDB_id=446804 HPY04_RS19250 WP_367889817.1 201011..201871(-) (comF) [Vibrio cholerae strain SA3G]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLTKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARLRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=446804 HPY04_RS19250 WP_367889817.1 201011..201871(-) (comF) [Vibrio cholerae strain SA3G]
ATGCCCCAGCCGTGTACCAATACTAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGTTGACTCCGGAATGTCATCTCTGTCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGCCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGACTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCACTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCTCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(227-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.601

100

0.986
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392