Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | ST1A_RS09355 | Genome accession | NZ_CP065384 |
| Coordinates | 1806470..1807738 (-) | Length | 422 a.a. |
| NCBI ID | WP_002952183.1 | Uniprot ID | Q5M295 |
| Organism | Streptococcus thermophilus strain 1A | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1801470..1812738
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ST1A_RS09320 (ST1A_09290) | - | 1802788..1803300 (-) | 513 | WP_011681725.1 | helix-turn-helix transcriptional regulator | - |
| ST1A_RS09325 | - | 1803481..1803663 (+) | 183 | WP_024704268.1 | hypothetical protein | - |
| ST1A_RS09330 (ST1A_09295) | - | 1803709..1804686 (+) | 978 | Protein_1781 | replication initiation protein | - |
| ST1A_RS09335 (ST1A_09300) | - | 1804698..1804886 (+) | 189 | WP_000369785.1 | DUF3173 domain-containing protein | - |
| ST1A_RS09340 (ST1A_09305) | - | 1804888..1806027 (+) | 1140 | WP_011681729.1 | site-specific integrase | - |
| ST1A_RS09355 (ST1A_09320) | rarA | 1806470..1807738 (-) | 1269 | WP_002952183.1 | replication-associated recombination protein A | Machinery gene |
| ST1A_RS09360 (ST1A_09325) | rpmB | 1807908..1808096 (+) | 189 | WP_002952184.1 | 50S ribosomal protein L28 | - |
| ST1A_RS09365 (ST1A_09330) | - | 1808223..1808489 (+) | 267 | WP_011681731.1 | IreB family regulatory phosphoprotein | - |
| ST1A_RS09370 (ST1A_09335) | ruvX | 1808489..1808908 (+) | 420 | WP_011681732.1 | Holliday junction resolvase RuvX | - |
| ST1A_RS09375 (ST1A_09340) | - | 1809017..1809322 (+) | 306 | WP_011681733.1 | DUF1292 domain-containing protein | - |
| ST1A_RS09380 (ST1A_09345) | - | 1809424..1810673 (-) | 1250 | Protein_1789 | ISL3 family transposase | - |
| ST1A_RS09385 (ST1A_09350) | - | 1810954..1812600 (+) | 1647 | WP_011681734.1 | membrane protein | - |
Sequence
Protein
Download Length: 422 a.a. Molecular weight: 46419.92 Da Isoelectric Point: 6.8977
>NTDB_id=446695 ST1A_RS09355 WP_002952183.1 1806470..1807738(-) (rarA) [Streptococcus thermophilus strain 1A]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR
Nucleotide
Download Length: 1269 bp
>NTDB_id=446695 ST1A_RS09355 WP_002952183.1 1806470..1807738(-) (rarA) [Streptococcus thermophilus strain 1A]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCCTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCCTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
59.666 |
99.289 |
0.592 |