Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   C270_RS05005 Genome accession   NC_018673
Coordinates   1004304..1006697 (-) Length   797 a.a.
NCBI ID   WP_014974487.1    Uniprot ID   K0DD13
Organism   Leuconostoc carnosum JB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 999304..1011697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C270_RS04980 (C270_04800) mvk 999323..1000255 (+) 933 WP_014974482.1 mevalonate kinase -
  C270_RS04985 (C270_04805) - 1000308..1001141 (-) 834 WP_014974483.1 class A sortase -
  C270_RS04990 (C270_04810) - 1001404..1002396 (-) 993 WP_014974484.1 aldo/keto reductase -
  C270_RS04995 (C270_04815) - 1002399..1003292 (-) 894 WP_014974485.1 GDSL-type esterase/lipase family protein -
  C270_RS05000 (C270_04820) - 1003289..1004263 (-) 975 WP_014974486.1 ribose-phosphate diphosphokinase -
  C270_RS05005 (C270_04825) recD/recD2/recDB 1004304..1006697 (-) 2394 WP_014974487.1 ATP-dependent RecD-like DNA helicase Machinery gene
  C270_RS05010 (C270_04830) - 1006730..1007383 (-) 654 WP_014974488.1 histidine phosphatase family protein -
  C270_RS05015 (C270_04835) - 1007376..1007723 (-) 348 WP_014974489.1 cysteine desulfurase -
  C270_RS05020 (C270_04840) - 1007850..1008965 (-) 1116 WP_014974490.1 BMP family protein -
  C270_RS05025 (C270_04845) - 1009108..1010556 (-) 1449 WP_014974491.1 RsmF rRNA methyltransferase first C-terminal domain-containing protein -
  C270_RS05030 (C270_04850) rbsK 1010556..1011467 (-) 912 WP_014974492.1 ribokinase -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 88212.46 Da        Isoelectric Point: 4.9904

>NTDB_id=44667 C270_RS05005 WP_014974487.1 1004304..1006697(-) (recD/recD2/recDB) [Leuconostoc carnosum JB16]
MAYQEQQLEKITGTLQNVIFASSDSYFKILSIQIDDSTLEDWDEPEIIATGTFADVQEGSVYAFYGNVVRHPKYGKQLKV
ERYENELPPDENGLIKYFASGQFSGIGQKTAEKIVDHLGLNAVNLILDDTSILDGIVKESQAKKLARTLQLNLGLERLFQ
VGNQFGIGADIAGRLFDQYGNEAQDILTQDPFRLVFEFDGISFKTADQIGHKIGINRDDKRRLQAAVYATIMNVSFQHGH
TYLTRQQLQQTSIHMLRDNSMSNEVELAIDTLLDNETLVADDDRLYTASLYAAEKSVAHDLKRLLQAKNPLDLTENDICD
AFVTPGNMTLDDMQRQAIQLGLSAQVFVLTGGPGTGKTTIVRSIVATWHQLLKDRVKFADDAKAFLKTYAVKMASPTGRA
AKRMTEVTGYEATTIHRLLGIADLDEPEFNIDNPLAGGLMIIDEASMLDIELTAKLLAAVPNGMKLIIVGDSDQLPSVGP
GNVLADLVNSGVIAHAELEIIYRQGRGSSITALAQHIKQGELPSDFLNNQLDRSAFMVAPEQADAAIKQVIEAAVKKGYT
QDDLQILTPMYKTPVGVNALNTMAQALFNPSRPTQKSLQFGTTIFRQGDKVLQLENDSERDVFNGDMGKIVVVEYKNDKG
NSDHEDRLVVDFDGKELPYPKKNLNQLTLAYATTVHKAQGNEFKLVIMALTTHFGLMLNRNLLYTGITRAKEALILVGEY
AAFSRAAQTAVPTRLTFLKERLQIDGPRQEIDTVPKKHNNKAIIDHQLTIEMVMTGAIDPLIGLDGLTPYDFMPNIK

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=44667 C270_RS05005 WP_014974487.1 1004304..1006697(-) (recD/recD2/recDB) [Leuconostoc carnosum JB16]
ATGGCATATCAGGAACAACAATTAGAAAAAATTACTGGGACGTTGCAAAACGTCATTTTTGCGTCCAGTGATTCGTATTT
TAAAATATTATCTATTCAAATTGATGATTCAACATTAGAAGATTGGGACGAACCAGAAATTATTGCAACAGGTACTTTTG
CCGACGTACAAGAAGGTAGTGTTTATGCTTTTTATGGTAATGTTGTGCGTCACCCTAAATATGGGAAACAGCTTAAAGTA
GAACGTTATGAAAATGAATTACCACCAGATGAAAATGGTTTGATTAAGTATTTTGCTAGCGGACAATTTTCTGGTATTGG
TCAAAAAACTGCAGAAAAAATTGTCGATCATTTAGGATTAAACGCAGTCAATCTAATCTTGGATGACACTAGTATTTTGG
ATGGTATTGTTAAAGAATCACAAGCTAAGAAGCTAGCGCGGACATTACAGTTAAATCTAGGATTAGAACGTTTGTTTCAG
GTTGGAAATCAGTTTGGAATTGGTGCTGATATTGCAGGACGGTTGTTTGATCAATATGGGAATGAGGCACAAGATATTCT
AACGCAAGATCCTTTTCGTTTGGTTTTTGAGTTTGATGGTATTTCTTTTAAAACTGCTGATCAAATTGGCCATAAAATTG
GAATTAATCGTGATGATAAACGACGCTTACAAGCAGCAGTGTATGCAACAATTATGAACGTTAGTTTTCAACATGGTCAT
ACTTATTTAACGCGCCAACAGTTGCAACAAACAAGTATCCACATGCTTCGTGATAATAGTATGTCAAATGAAGTTGAATT
AGCAATTGATACATTGCTTGACAACGAGACACTTGTAGCTGATGACGATCGCTTATATACAGCAAGTTTGTATGCGGCGG
AAAAATCGGTGGCTCATGATTTAAAACGTTTATTACAAGCTAAGAATCCACTTGATTTAACTGAAAATGATATTTGTGAT
GCGTTTGTTACACCAGGGAATATGACTTTGGATGATATGCAACGACAAGCAATTCAATTAGGGTTAAGTGCGCAGGTGTT
TGTATTGACTGGTGGTCCGGGTACTGGTAAAACTACCATTGTGCGTTCTATTGTTGCAACATGGCACCAATTATTGAAGG
ATCGTGTTAAATTTGCAGACGATGCTAAGGCGTTCTTGAAAACCTATGCTGTTAAAATGGCTTCTCCCACAGGACGTGCA
GCTAAGCGGATGACAGAGGTGACCGGTTATGAAGCGACAACAATTCATCGTTTACTAGGCATCGCTGATTTAGATGAACC
TGAATTTAATATTGATAATCCACTGGCTGGGGGCTTGATGATTATTGATGAAGCATCAATGTTAGATATTGAGTTAACTG
CGAAACTGTTAGCAGCAGTGCCTAATGGTATGAAGTTAATCATCGTTGGTGATTCGGACCAGTTACCATCAGTAGGACCA
GGCAACGTTTTAGCTGACTTAGTGAATAGTGGTGTCATAGCGCATGCTGAATTAGAAATCATCTATCGTCAAGGTCGAGG
TAGCAGTATTACCGCGCTTGCACAACATATCAAGCAAGGCGAATTGCCGTCAGATTTCTTAAATAATCAGTTAGATCGCT
CAGCATTTATGGTAGCCCCTGAACAAGCGGATGCTGCCATAAAGCAAGTTATAGAGGCAGCTGTTAAAAAAGGTTATACA
CAGGATGACCTGCAAATTCTAACGCCAATGTATAAAACACCAGTTGGAGTGAATGCTTTAAATACTATGGCGCAAGCACT
TTTTAATCCCAGTCGTCCAACACAAAAATCTTTGCAGTTTGGCACAACTATTTTTCGTCAAGGGGACAAAGTATTGCAAC
TCGAAAATGACAGTGAGCGTGATGTTTTTAATGGTGATATGGGTAAAATTGTTGTTGTGGAATATAAAAATGATAAGGGT
AATAGTGATCATGAAGATCGGTTAGTTGTTGATTTTGATGGGAAAGAATTACCTTATCCAAAGAAAAATCTGAATCAATT
AACTTTAGCTTATGCGACAACTGTTCACAAAGCGCAAGGCAATGAATTTAAGTTGGTGATTATGGCATTAACCACACATT
TTGGATTAATGCTGAATCGTAATTTACTTTACACTGGGATTACTCGTGCCAAAGAAGCACTCATCTTAGTAGGAGAATAT
GCAGCCTTTAGCCGAGCGGCACAAACTGCTGTCCCAACACGCTTAACATTTTTAAAAGAACGTTTGCAGATTGATGGGCC
GCGTCAAGAAATAGACACAGTACCTAAAAAACATAACAATAAAGCGATTATTGATCATCAGTTAACGATAGAGATGGTGA
TGACTGGCGCTATTGACCCATTAATTGGGCTAGATGGGCTGACACCTTATGATTTCATGCCAAATATCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-242)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(670-717)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(580-652)

AAA domain (AAA_30)

(330-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DD13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

38.75

100

0.389

Multiple sequence alignment