Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HNV93_RS04100 Genome accession   NZ_CP053717
Coordinates   919205..919984 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain A2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 914205..924984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNV93_RS04070 fliH 914249..915004 (-) 756 WP_032874891.1 flagellar assembly protein FliH -
  HNV93_RS04075 fliG 914997..916013 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HNV93_RS04080 fliF 916026..917636 (-) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  HNV93_RS04085 fliE 917679..917999 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HNV93_RS04090 flgC 918010..918462 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  HNV93_RS04095 flgB 918462..918851 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  HNV93_RS04100 codY 919205..919984 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HNV93_RS04105 hslU 920022..921434 (-) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  HNV93_RS04110 hslV 921442..921987 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  HNV93_RS04115 xerC 922003..922920 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  HNV93_RS04120 trmFO 922990..924297 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=446557 HNV93_RS04100 WP_003154263.1 919205..919984(-) (codY) [Bacillus velezensis strain A2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=446557 HNV93_RS04100 WP_003154263.1 919205..919984(-) (codY) [Bacillus velezensis strain A2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471