Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I5044_RS07665 Genome accession   NZ_CP065354
Coordinates   1621304..1622578 (+) Length   424 a.a.
NCBI ID   WP_000102738.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JW_comp_novo     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1616304..1627578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5044_RS07635 (I5044_07635) mnmA 1616506..1617624 (-) 1119 WP_000066093.1 tRNA 2-thiouridine(34) synthase MnmA -
  I5044_RS07640 (I5044_07640) - 1617625..1618767 (-) 1143 WP_000409169.1 cysteine desulfurase family protein -
  I5044_RS07645 (I5044_07645) - 1619079..1620092 (+) 1014 WP_000985896.1 LLM class flavin-dependent oxidoreductase -
  I5044_RS07650 (I5044_07650) - 1620329..1620475 (-) 147 WP_000009238.1 SAS049 family protein -
  I5044_RS07655 (I5044_07655) - 1620515..1620697 (-) 183 WP_000752909.1 CsbD family protein -
  I5044_RS07660 (I5044_07660) cymR 1620797..1621219 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  I5044_RS07665 (I5044_07665) rarA 1621304..1622578 (+) 1275 WP_000102738.1 replication-associated recombination protein A Machinery gene
  I5044_RS07670 (I5044_07670) - 1622739..1623512 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  I5044_RS07675 (I5044_07675) - 1623512..1623640 (-) 129 WP_031927331.1 hypothetical protein -
  I5044_RS07685 (I5044_07685) aspS 1623973..1625739 (-) 1767 WP_000044796.1 aspartate--tRNA ligase -
  I5044_RS07690 (I5044_07690) hisS 1625755..1627017 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47234.81 Da        Isoelectric Point: 8.3539

>NTDB_id=446281 I5044_RS07665 WP_000102738.1 1621304..1622578(+) (rarA) [Staphylococcus aureus strain JW_comp_novo]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=446281 I5044_RS07665 WP_000102738.1 1621304..1622578(+) (rarA) [Staphylococcus aureus strain JW_comp_novo]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGACGAAGATGCCATGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAAGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCCGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686