Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HPK20_RS13915 Genome accession   NZ_CP053664
Coordinates   2996814..2997515 (+) Length   233 a.a.
NCBI ID   WP_044363313.1    Uniprot ID   -
Organism   Vibrio fluvialis strain A8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2991814..3002515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK20_RS13895 (HPK20_13915) - 2992248..2992910 (+) 663 WP_171933995.1 hypothetical protein -
  HPK20_RS13900 (HPK20_13920) - 2992966..2995275 (+) 2310 WP_171933996.1 Tex family protein -
  HPK20_RS13905 (HPK20_13925) - 2995358..2995828 (-) 471 WP_140229734.1 ATP-dependent Lon protease -
  HPK20_RS13910 (HPK20_13930) bioH 2995957..2996727 (-) 771 WP_165880872.1 pimeloyl-ACP methyl ester esterase BioH -
  HPK20_RS13915 (HPK20_13935) comF 2996814..2997515 (+) 702 WP_044363313.1 amidophosphoribosyltransferase Machinery gene
  HPK20_RS13920 (HPK20_13940) nfuA 2997616..2998203 (+) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  HPK20_RS13925 (HPK20_13945) nudE 2998349..2998897 (+) 549 WP_047459232.1 ADP compounds hydrolase NudE -
  HPK20_RS13930 (HPK20_13950) cysQ 2998921..2999748 (+) 828 WP_020429367.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HPK20_RS13935 (HPK20_13955) - 2999778..3000536 (-) 759 WP_171933997.1 type II secretion system protein N -
  HPK20_RS13940 (HPK20_13960) - 3000536..3001042 (-) 507 WP_024373337.1 type II secretion system protein M -
  HPK20_RS13945 (HPK20_13965) gspL 3001052..3002263 (-) 1212 WP_100267570.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26363.40 Da        Isoelectric Point: 8.8535

>NTDB_id=446145 HPK20_RS13915 WP_044363313.1 2996814..2997515(+) (comF) [Vibrio fluvialis strain A8]
MLTNRLQKTMFSWLRPSCQLCGLPLESHNTQSLCGACLDWYAPTTRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDY
RFPLSQSVHQLKYQRQFWQAQPLAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRL
ATPPQQGLNKAQRRRNLNQAFVLNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=446145 HPK20_RS13915 WP_044363313.1 2996814..2997515(+) (comF) [Vibrio fluvialis strain A8]
ATGTTAACCAATCGACTTCAAAAAACCATGTTTTCGTGGCTGAGACCGTCGTGTCAGCTGTGCGGTTTGCCCCTTGAATC
GCATAACACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCACGCGTTGCGCTCGCTGCGGCCTGCCTT
GTGAAACCGCCACCGAACAGTGTGGCCAATGCCTGACATCGCCGCCGCCGTGGCATAAGCTCTATTGTTTGGGCGATTAC
CGTTTTCCACTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCGCTGGCCGGATTGTT
AGCCCCAAGAATTGTATCGCCCGCCCCTCTGGTGACCTGCGTGCCGCTGCACTGGCGCCGCCATGCCTGGCGCGGTTTCA
ATCAAAGTGATGTTTTGGCGCGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGTTTTCCCGTCGCCTG
GCCACCCCGCCGCAGCAAGGCCTGAACAAAGCTCAGCGCCGGCGCAATCTCAACCAAGCTTTTGTCTTAAACAGTGCGCC
GAGCCACAGACACATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATGCAATTTACTGCTTG
ATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.378

100

0.644
  comF Vibrio campbellii strain DS40M4

49.791

100

0.511