Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BANAU_RS08325 Genome accession   NC_017061
Coordinates   1672314..1673093 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis YAU B9601-Y2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667314..1678093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BANAU_RS08305 (BANAU_1566) trmFO 1668001..1669308 (+) 1308 WP_014417766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BANAU_RS08310 (BANAU_1567) xerC 1669378..1670295 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  BANAU_RS08315 (BANAU_1568) hslV 1670311..1670856 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  BANAU_RS08320 (BANAU_1569) hslU 1670873..1672276 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  BANAU_RS08325 (BANAU_1570) codY 1672314..1673093 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BANAU_RS08330 (BANAU_1571) flgB 1673447..1673836 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  BANAU_RS08335 (BANAU_1572) flgC 1673836..1674288 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  BANAU_RS08340 (BANAU_1573) fliE 1674299..1674619 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BANAU_RS08345 (BANAU_1574) fliF 1674662..1676272 (+) 1611 WP_014417768.1 flagellar basal-body MS-ring/collar protein FliF -
  BANAU_RS08350 (BANAU_1575) fliG 1676285..1677301 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  BANAU_RS08355 (BANAU_1576) fliH 1677294..1678049 (+) 756 WP_014417769.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=44612 BANAU_RS08325 WP_003154263.1 1672314..1673093(+) (codY) [Bacillus velezensis YAU B9601-Y2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=44612 BANAU_RS08325 WP_003154263.1 1672314..1673093(+) (codY) [Bacillus velezensis YAU B9601-Y2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment