Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   HPE59_RS06520 Genome accession   NZ_CP053659
Coordinates   1274199..1274714 (-) Length   171 a.a.
NCBI ID   WP_002903863.1    Uniprot ID   A0AB36G830
Organism   Campylobacter jejuni strain 2016-IZSVE-19-111250     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1269199..1279714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE59_RS06505 (HPE59_06510) - 1269316..1271034 (-) 1719 WP_171849133.1 flagellin -
  HPE59_RS06510 (HPE59_06515) - 1271131..1272939 (-) 1809 WP_052782645.1 motility associated factor glycosyltransferase family protein -
  HPE59_RS06515 (HPE59_06520) - 1272949..1274199 (-) 1251 WP_171849134.1 DUF2920 family protein -
  HPE59_RS06520 (HPE59_06525) ctsG 1274199..1274714 (-) 516 WP_002903863.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HPE59_RS06525 (HPE59_06530) tsaD 1274715..1275722 (-) 1008 WP_002889944.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  HPE59_RS06530 (HPE59_06535) - 1275719..1277113 (-) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  HPE59_RS06535 (HPE59_06540) dxr 1277115..1278185 (-) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  HPE59_RS06540 (HPE59_06545) cdsA 1278182..1278907 (-) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  HPE59_RS06545 (HPE59_06550) - 1278916..1279254 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18734.63 Da        Isoelectric Point: 7.2439

>NTDB_id=446052 HPE59_RS06520 WP_002903863.1 1274199..1274714(-) (ctsG) [Campylobacter jejuni strain 2016-IZSVE-19-111250]
MKKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYFLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=446052 HPE59_RS06520 WP_002903863.1 1274199..1274714(-) (ctsG) [Campylobacter jejuni strain 2016-IZSVE-19-111250]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGCATGAAGCCGAGGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATTTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93