Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HPH06_RS09830 Genome accession   NZ_CP053655
Coordinates   2243424..2245292 (-) Length   622 a.a.
NCBI ID   WP_003829615.1    Uniprot ID   -
Organism   Bifidobacterium breve strain 1101A     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2238424..2250292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPH06_RS09815 (HPH06_09700) - 2238990..2240408 (-) 1419 WP_155464282.1 MFS transporter -
  HPH06_RS09820 (HPH06_09705) - 2240513..2241454 (+) 942 WP_042994362.1 FAD:protein FMN transferase -
  HPH06_RS09825 (HPH06_09710) rcrQ 2241463..2243292 (-) 1830 WP_025263335.1 ABC transporter ATP-binding protein Regulator
  HPH06_RS09830 (HPH06_09715) rcrP 2243424..2245292 (-) 1869 WP_003829615.1 ABC transporter ATP-binding protein Regulator
  HPH06_RS09835 (HPH06_09720) - 2245476..2245997 (-) 522 WP_019727591.1 MarR family winged helix-turn-helix transcriptional regulator -
  HPH06_RS09840 (HPH06_09725) - 2246623..2246835 (+) 213 WP_230454659.1 DUF1684 domain-containing protein -
  HPH06_RS09845 (HPH06_09730) - 2246923..2248446 (-) 1524 WP_014484406.1 amino acid permease -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68126.78 Da        Isoelectric Point: 5.3281

>NTDB_id=445987 HPH06_RS09830 WP_003829615.1 2243424..2245292(-) (rcrP) [Bifidobacterium breve strain 1101A]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVCCAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMALVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRAADIAKTGQTGTVEFKNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTSAGRKREALQLATDAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAK
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHRELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=445987 HPH06_RS09830 WP_003829615.1 2243424..2245292(-) (rcrP) [Bifidobacterium breve strain 1101A]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAGACACCGGGCAGCGCAATGGCGGACA
TCTGGGTCGCCGGCGGCAAGATGCTGCTGGTCTCGCTCGGCTCGGTCTGCTGCGCCATCATCACCGGCTATATCGCGGCG
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTACGCTCGCTCGAATTTCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTCGTGATTCTGCTGGTCGCTGTCGTGATCCTCATGGCACTGGTCATGCCGAAGTTCAAGGCCATGCA
GAGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCCAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTGATGAACACGGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCGCGCGCCGACGTGTCCGCACAGCGCGTGATGGAAGTGTTGAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGCGGCCGACATCGCAAAGACCGGGCAGACCGGCACCGTGGAATTCAAGAACGT
GAGCTTCACCTACCCGGATTCGCGCGAGGCTATGCTGCAGGATATCAATTTCAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTCGTGCCGCGCTTCTACGACGTATCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTACGCGACAAGATCGGCTATGTACCGCAGCGCTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAACATCAGCTACGGCGACAAGCCCGGAGAGAACGACGCGGTCGAACTGGCGGATA
CTTCCACTTCCGCCGGCCGCAAGCGCGAGGCGCTTCAGCTGGCCACCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAAACAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCCGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCAAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTCGTGGGCCAAGGCACGCATAGGGAGCTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(53-292)

ABC transporter (ABC_tran)

(359-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.259

100

0.49