Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I3J23_RS13960 Genome accession   NZ_CP065159
Coordinates   2725572..2727389 (+) Length   605 a.a.
NCBI ID   WP_032857453.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2720572..2732389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS13945 (I3J23_13945) - 2721356..2722117 (+) 762 WP_003155531.1 MurR/RpiR family transcriptional regulator -
  I3J23_RS13950 (I3J23_13950) - 2722134..2723720 (+) 1587 WP_052587310.1 alpha-glucoside-specific PTS transporter subunit IIBC -
  I3J23_RS13955 (I3J23_13955) - 2723858..2725591 (+) 1734 WP_014304644.1 ABC transporter ATP-binding protein -
  I3J23_RS13960 (I3J23_13960) rcrQ 2725572..2727389 (+) 1818 WP_032857453.1 ABC transporter ATP-binding protein Regulator
  I3J23_RS13965 (I3J23_13965) - 2727557..2727961 (+) 405 WP_003155526.1 DoxX family protein -
  I3J23_RS13970 (I3J23_13970) - 2727978..2728835 (+) 858 WP_069013141.1 VOC family protein -
  I3J23_RS13975 (I3J23_13975) cyoE 2729214..2730161 (+) 948 WP_048367649.1 heme o synthase -
  I3J23_RS13980 (I3J23_13980) - 2730199..2730750 (-) 552 WP_014304649.1 PadR family transcriptional regulator -
  I3J23_RS13985 (I3J23_13985) - 2730984..2731586 (+) 603 WP_003155520.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67460.10 Da        Isoelectric Point: 9.5659

>NTDB_id=445826 I3J23_RS13960 WP_032857453.1 2725572..2727389(+) (rcrQ) [Bacillus amyloliquefaciens strain GXU-1]
MEKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
RTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHATHQPIKTGEIEFRDVSFGYQEDSPILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNNGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=445826 I3J23_RS13960 WP_032857453.1 2725572..2727389(+) (rcrQ) [Bacillus amyloliquefaciens strain GXU-1]
GTGGAGAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCGTATGTAGCCGAAAAAAAGGGGCTTTTAACCCTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCAATTGATCATTTTATCGTCGGA
CGGACGACGGACGGATTGGCGGGTGTACTGTTCATACTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTCACCCATCTGCATGAGCTGC
CGATACCGTTTTTTGATAAACAGCGCCTCGGCGATTTGATGAGCCGGGTTACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATACATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGCCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGACTCC
TGTTTAAGCAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGAGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGGAGCAATTTTTAGAAAAAAACGCGGCGTTACAATCATCAGGCTTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTCATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGGTGGATTTCGATCGGTTCCATTGTCGTATTCGCAGAATACTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTGGCGAACCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAGCGGGTGTTTGACGTGCTGGATGAAAA
AGAGGAGCGGGAAGATGAAGAGCATGCGACGCACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCCGATCTTAAAACATCTGTCCTTCAGCGTTCCGAAAGGACAGTCAATCGCCTTCGTCGGACCG
ACCGGAGCGGGTAAAACAACCGTTACGAGCCTGATCGCCCGTTTTTACGAGCCCAATAACGGAAAAATCCTCATTGACGG
AACGGACATCAAAAAACTGACGAGGTCCAGTCTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCCTTTCTCTTTCAGG
GCACCATCAGGGAAAATATCCGTTACGGCCGTCTGGATGCATCTGATCAAGAGGTGGAGGCAGCCGCAAAAGCCGCCAAT
GCCCACGGATTCATCGAACGGCTCCCGAAAGGCTACGATACCGTCCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
AAAACAGCTTATTTCCATCGCGAGAGCTGTGCTGGCGGATCCGGTGCTGCTCATTTTGGATGAAGCGACGAGCAACATTG
ATACGGTGACGGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAACACGATTCAAAAAGCCGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGGTTTTACCGGGAATTATATGAGAGCCAGTTCCGGGAATCATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372