Detailed information NTG0445752

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: I3J23_RS03155
• Genome accession: NZ_CP065159
• Coordinates: 598454..599722 (+)
• Length: 422 a.a.
• NCBI ID: WP_003152729.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain GXU-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 593454..604722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3J23_RS03135 (I3J23_03135)	-	594825..595445 (-)	621	WP_088005508.1	tetratricopeptide repeat protein	-
I3J23_RS03140 (I3J23_03140)	mnmA	595533..596648 (-)	1116	WP_024085647.1	tRNA 2-thiouridine(34) synthase MnmA	-
I3J23_RS03145 (I3J23_03145)	-	596685..597824 (-)	1140	WP_046559919.1	cysteine desulfurase family protein	-
I3J23_RS03150 (I3J23_03150)	cymR	597843..598259 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
I3J23_RS03155 (I3J23_03155)	rarA	598454..599722 (+)	1269	WP_003152729.1	replication-associated recombination protein A	Machinery gene
I3J23_RS03160 (I3J23_03160)	-	599798..600562 (-)	765	WP_044053490.1	tRNA threonylcarbamoyladenosine dehydratase	-
I3J23_RS03170 (I3J23_03170)	aspS	600889..602667 (-)	1779	WP_003152727.1	aspartate--tRNA ligase	-
I3J23_RS03175 (I3J23_03175)	hisS	602682..603956 (-)	1275	WP_003152726.1	histidine--tRNA ligase	-
I3J23_RS03180 (I3J23_03180)	-	604313..604483 (-)	171	WP_087920774.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46660.57 Da
• Isoelectric Point: 8.5446

>NTDB_id=445752 I3J23_RS03155 WP_003152729.1 598454..599722(+) (rarA) [Bacillus amyloliquefaciens strain GXU-1]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=445752 I3J23_RS03155 WP_003152729.1 598454..599722(+) (rarA) [Bacillus amyloliquefaciens strain GXU-1]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGTCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCGAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGATGAAGTGCACAGACTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAATCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAAACAGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCGTTCCAAAAATCGATCCGGGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCGAAATCAAACTCCGCCATTTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCCCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.974	99.763	0.908