Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IVB58_RS17965 Genome accession   NZ_CP065051
Coordinates   3800389..3801654 (-) Length   421 a.a.
NCBI ID   WP_001285406.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3795389..3806654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS17935 (IVB58_17890) pncA 3795611..3796255 (-) 645 WP_002001209.1 bifunctional nicotinamidase/pyrazinamidase -
  IVB58_RS17940 (IVB58_17895) dapA 3796585..3797478 (+) 894 WP_000193599.1 4-hydroxy-tetrahydrodipicolinate synthase -
  IVB58_RS17945 (IVB58_17900) - 3797494..3798096 (+) 603 WP_001177091.1 hypothetical protein -
  IVB58_RS17950 (IVB58_17905) purC 3798134..3798853 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  IVB58_RS17955 (IVB58_17910) - 3799046..3799249 (+) 204 WP_000418560.1 hypothetical protein -
  IVB58_RS17960 (IVB58_17915) - 3799534..3800373 (+) 840 WP_000349494.1 formate/nitrite transporter family protein -
  IVB58_RS17965 (IVB58_17920) rarA 3800389..3801654 (-) 1266 WP_001285406.1 replication-associated recombination protein A Machinery gene
  IVB58_RS17970 (IVB58_17925) - 3801760..3802932 (-) 1173 WP_000986266.1 PQQ-dependent sugar dehydrogenase -
  IVB58_RS17975 (IVB58_17930) - 3803042..3803500 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  IVB58_RS17980 (IVB58_17935) - 3803695..3803853 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  IVB58_RS17985 (IVB58_17940) - 3804025..3804762 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  IVB58_RS17990 (IVB58_17945) - 3804948..3805310 (+) 363 WP_000130110.1 HIT family protein -
  IVB58_RS17995 (IVB58_17950) mutY 3805451..3806485 (+) 1035 WP_001113859.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46945.60 Da        Isoelectric Point: 5.8354

>NTDB_id=445554 IVB58_RS17965 WP_001285406.1 3800389..3801654(-) (rarA) [Acinetobacter baumannii strain 2016GDAB1]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=445554 IVB58_RS17965 WP_001285406.1 3800389..3801654(-) (rarA) [Acinetobacter baumannii strain 2016GDAB1]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGCCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGTTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCGAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375