Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ICC24_RS14770 Genome accession   NZ_CP065029
Coordinates   2838948..2841344 (-) Length   798 a.a.
NCBI ID   WP_003183932.1    Uniprot ID   -
Organism   Bacillus licheniformis strain LCDD6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2833948..2846344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICC24_RS14750 (ICC24_14750) - 2836892..2837950 (-) 1059 WP_003183924.1 AI-2E family transporter -
  ICC24_RS14755 (ICC24_14755) - 2838041..2838172 (-) 132 WP_003183926.1 YrzQ family protein -
  ICC24_RS14760 (ICC24_14760) - 2838188..2838379 (-) 192 WP_003183928.1 hypothetical protein -
  ICC24_RS14765 (ICC24_14765) - 2838395..2838859 (-) 465 WP_003183930.1 PRC-barrel domain-containing protein -
  ICC24_RS14770 (ICC24_14770) recD/recD2/recDB 2838948..2841344 (-) 2397 WP_003183932.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ICC24_RS14775 (ICC24_14775) - 2841395..2842045 (-) 651 WP_003183935.1 tetratricopeptide repeat protein -
  ICC24_RS14780 (ICC24_14780) mnmA 2842139..2843257 (-) 1119 WP_003183938.1 tRNA 2-thiouridine(34) synthase MnmA -
  ICC24_RS14785 (ICC24_14785) - 2843363..2844502 (-) 1140 WP_009327778.1 cysteine desulfurase family protein -
  ICC24_RS14790 (ICC24_14790) cymR 2844523..2844939 (-) 417 WP_009327777.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89745.34 Da        Isoelectric Point: 4.9464

>NTDB_id=445434 ICC24_RS14770 WP_003183932.1 2838948..2841344(-) (recD/recD2/recDB) [Bacillus licheniformis strain LCDD6]
MQRHNPDQIEMEEASFVKGTVTAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIETRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLAAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQVLAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFAKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=445434 ICC24_RS14770 WP_003183932.1 2838948..2841344(-) (recD/recD2/recDB) [Bacillus licheniformis strain LCDD6]
ATGCAGCGCCATAACCCGGACCAGATCGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTAACGGCTGTCATATATCA
TAATGAAACAAACCTGTATACCGTACTGAAAGTAAAAGTGGAAGAAACATCAGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACCGGTTACTTTCCTTTGATCCATGAAGACGATATCTACACATTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTCAAAAAGGAAGTGCCGACAACGAAAGAAGGCGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAGAAAACGGCCGAGGAAATTGTCAATAAGCTGGGGGAAGGGGCAATCAACAAAATTTTAAGCG
ACGGCGCCGTCCTGTATGATGTCCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTTCAGCAGCATCAG
GGGCTCGAGCAGATTATGATCTCCTTGAGCGAATTCGGCTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTACGA
AGCGGAAACGCTCGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAAGATGTTGAAGGAATCGGCTTTATCAAAGCAG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAAGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACGTACATAGAAACGAGACAGCTCATCATCGAGACGCAAAAGCTGTTAAACCAGTCAGC
AGGCGATGAAAAAGTAACCGAGATGGATGTGGCGGACGCGATCATTTCCTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTATTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGCCAAAAAGAAGCCATACAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACGGGCGGACCGGGAACCGGGAAAA
CGACCGTCATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAAGAT
GAAACGTTTCCGTTTGTGCTGGCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGTCTGCCGGCCGT
TACGATTCACAGGCTTCTCGGCTGGAACGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGAAGGACGGCTGC
TCATTATTGATGAAACGAGCATGCTTGATATATGGCTTGCCAACCAATTATTCAAGGCGATCCCCGATCGGATACAGGTG
ATCATGGTCGGAGATGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTAAGGGATCTGTTGGCATCGAATGTGAT
TCCTTCTGTCAGATTAACCGACATTTACAGACAGGCTGAAGGCTCTTCAATCGTTGAACTGGCGCACGAAATGAAACAGG
GAAAGCTTCCGGAAAACTTGGCCGCCCCGACAAAAGACCGTTCTTTTATTCGCTGCCGCCAGCAGCAGATCAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGATATTCGGCCAGGGATATTCAGGTTTTGGCTCCGATGTACAGAGG
AGCGGCCGGCATCAATGAGTTGAACGCCCTTTTGCAGGGCATACTGAATCCGCCGAAGCCGAAAGGCAGGGAAATGAAGT
ACGGAGATGTCGTGTACCGTACCGGAGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAGCATAACGTGTTTAACGGTGAC
ATGGGCGAGATCGTCTCGATTTTTTATGCGAAAGAAAATACGGAAAAAGAAGATATGGCCGTTGTCTCTTTCGACGGGAA
TGAAATCACGTTTGCAAAAAAAGATTTCAACCAGTTTACGCACGCCTATTGCTGTTCGATCCACAAATCGCAAGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCTATTACA
AGAAGCAAAAAATTCCTGATTCTGTGCGGCGAAGAGGAAGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCAGAAAG
GCAGACATCGCTTAAAAGACGGCTTCAGCAGGCGGCACATGAAGAGGATGAAGAGCTCATGGCGCTTCAAAAAGAGCTGC
CATTCAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

81.727

100

0.818