Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ICC24_RS08935 Genome accession   NZ_CP065029
Coordinates   1727251..1727700 (+) Length   149 a.a.
NCBI ID   WP_003181503.1    Uniprot ID   Q65K02
Organism   Bacillus licheniformis strain LCDD6     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722251..1732700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICC24_RS08900 (ICC24_08900) ctaF 1722694..1723023 (+) 330 WP_003181487.1 cytochrome c oxidase subunit IVB -
  ICC24_RS08905 (ICC24_08905) ctaG 1723057..1723956 (+) 900 WP_025804483.1 cytochrome c oxidase assembly factor CtaG -
  ICC24_RS08910 (ICC24_08910) - 1724013..1724372 (-) 360 WP_003181492.1 YugN family protein -
  ICC24_RS08915 (ICC24_08915) - 1724540..1724986 (+) 447 WP_003181494.1 CBS domain-containing protein -
  ICC24_RS08920 (ICC24_08920) - 1725127..1726170 (+) 1044 WP_003181497.1 CAP domain-containing protein -
  ICC24_RS08925 (ICC24_08925) - 1726324..1726719 (+) 396 WP_003181499.1 YlbD family protein -
  ICC24_RS08930 (ICC24_08930) - 1726734..1726973 (+) 240 WP_003181501.1 YlbE-like family protein -
  ICC24_RS08935 (ICC24_08935) ylbF 1727251..1727700 (+) 450 WP_003181503.1 YlbF family regulator Regulator
  ICC24_RS08940 (ICC24_08940) - 1727772..1728044 (+) 273 WP_009328559.1 YlbG family protein -
  ICC24_RS22350 - 1728154..1728288 (+) 135 WP_254926361.1 hypothetical protein -
  ICC24_RS08945 (ICC24_08945) rsmD 1728337..1728903 (+) 567 WP_003181507.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ICC24_RS08950 (ICC24_08950) coaD 1728896..1729390 (+) 495 WP_003181508.1 pantetheine-phosphate adenylyltransferase -
  ICC24_RS08955 (ICC24_08955) ylbJ 1729399..1730619 (-) 1221 WP_003181511.1 sporulation integral membrane protein YlbJ -
  ICC24_RS08960 (ICC24_08960) - 1730943..1731965 (+) 1023 WP_009328558.1 SepM family pheromone-processing serine protease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16903.11 Da        Isoelectric Point: 6.3347

>NTDB_id=445391 ICC24_RS08935 WP_003181503.1 1727251..1727700(+) (ylbF) [Bacillus licheniformis strain LCDD6]
MFATMESLRLQNEAYDLANMILQSEAAEHYRKCYKRLREDEEAGRIIASFTKIKEQYEDVQRFGKYHPDYKEISKKMREI
KRELDLHDTVAEFKKAETELQSILDEVSVEIGHAVSKHIKVPTGNPYFDNLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=445391 ICC24_RS08935 WP_003181503.1 1727251..1727700(+) (ylbF) [Bacillus licheniformis strain LCDD6]
ATGTTTGCCACAATGGAATCGTTGCGGCTTCAAAATGAAGCATATGATTTGGCCAACATGATTCTTCAATCAGAGGCGGC
TGAACATTACAGAAAATGCTACAAGCGTCTCCGCGAAGATGAAGAGGCCGGACGTATTATCGCTTCGTTTACGAAAATAA
AAGAACAGTACGAGGATGTGCAGCGCTTTGGCAAGTATCATCCTGATTATAAAGAGATATCCAAGAAAATGAGGGAAATC
AAACGGGAGCTTGACCTTCACGATACAGTAGCCGAATTTAAAAAGGCGGAAACCGAGCTGCAATCCATTCTTGATGAAGT
CAGCGTGGAAATCGGTCATGCTGTGTCAAAACATATCAAAGTACCGACTGGAAACCCTTATTTTGATAATCTTTCATCTT
GCGGCGGCGGCTGCGGGTCAGGCGGAAGCTGCGGCTGTAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65K02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

84.564

100

0.846