Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HOO69_RS14470 Genome accession   NZ_CP053541
Coordinates   3121030..3121731 (+) Length   233 a.a.
NCBI ID   WP_171381653.1    Uniprot ID   A0AAE7AYM8
Organism   Vibrio europaeus strain NPI-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3116030..3126731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HOO69_RS14455 (HOO69_14500) - 3117167..3119491 (+) 2325 WP_171802305.1 Tex family protein -
  HOO69_RS14460 (HOO69_14505) - 3119584..3120054 (-) 471 WP_004746091.1 hypothetical protein -
  HOO69_RS14465 (HOO69_14510) bioH 3120176..3120970 (-) 795 WP_069667731.1 pimeloyl-ACP methyl ester esterase BioH -
  HOO69_RS14470 (HOO69_14515) comF 3121030..3121731 (+) 702 WP_171381653.1 phosphoribosyltransferase family protein Machinery gene
  HOO69_RS14475 (HOO69_14520) nfuA 3121818..3122405 (+) 588 WP_069667733.1 Fe-S biogenesis protein NfuA -
  HOO69_RS14480 (HOO69_14525) nudE 3122577..3123122 (+) 546 WP_171381654.1 ADP compounds hydrolase NudE -
  HOO69_RS14485 (HOO69_14530) cysQ 3123184..3124011 (+) 828 WP_171802306.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HOO69_RS14490 (HOO69_14535) recG 3124243..3126321 (-) 2079 WP_171802307.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26595.08 Da        Isoelectric Point: 8.6036

>NTDB_id=445072 HOO69_RS14470 WP_171381653.1 3121030..3121731(+) (comF) [Vibrio europaeus strain NPI-1]
MLTQRVVKYIADLLPMHCEVCHLALTKPHPPSGICDHCSRYFAPIPRCQRCGLPTPFDIAECGECLKHPPKWQRLYCVAD
YQPPLAQYVHRLKYERQFWQARKLANLLAPRIENPAQVITFVPLHWGRYLRRGFNQSELIACSLARQLNVPCQSLFKRVR
ATPQQQGLTKAERKRNLDRAFLLNGEIVADHIAIVDDVLTTGSTVQHLCELLLEAGVKSVDIYCICRTPEPAS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=445072 HOO69_RS14470 WP_171381653.1 3121030..3121731(+) (comF) [Vibrio europaeus strain NPI-1]
ATGTTAACTCAAAGGGTAGTGAAATACATCGCCGACCTGTTGCCTATGCATTGCGAGGTTTGCCATCTTGCGTTGACCAA
ACCACATCCACCTAGTGGTATTTGCGATCATTGCTCGCGTTACTTCGCGCCTATTCCTCGTTGCCAGCGCTGCGGTTTGC
CCACTCCTTTTGATATAGCAGAGTGCGGAGAATGTCTTAAACATCCGCCTAAATGGCAGCGGCTCTATTGTGTTGCTGAC
TATCAACCGCCACTTGCGCAATATGTTCATCGACTTAAGTACGAACGGCAATTTTGGCAGGCGCGTAAACTCGCGAATCT
GCTCGCCCCCAGAATAGAAAATCCCGCACAGGTCATCACGTTTGTGCCCCTGCATTGGGGGCGATATCTAAGGCGCGGAT
TTAATCAGAGCGAGTTGATAGCATGCTCACTGGCGCGGCAACTCAACGTACCGTGCCAGTCCCTGTTTAAAAGAGTGAGA
GCAACACCTCAGCAGCAAGGTTTAACTAAGGCAGAGCGAAAGCGAAATCTAGACCGTGCTTTCTTACTCAATGGAGAGAT
TGTTGCTGACCATATCGCGATTGTTGATGATGTTCTCACTACTGGAAGTACGGTGCAGCATTTATGCGAATTACTGCTTG
AAGCAGGGGTGAAAAGCGTTGATATTTACTGCATCTGCCGTACTCCTGAGCCAGCAAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.172

99.571

0.549
  comF Vibrio campbellii strain DS40M4

48.333

100

0.498