Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ITP52_RS06225 Genome accession   NZ_CP064818
Coordinates   1250854..1252668 (-) Length   604 a.a.
NCBI ID   WP_041851164.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1245854..1257668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS06200 (ITP52_06200) lnrL 1246364..1247299 (-) 936 WP_041851158.1 linearmycin resistance ATP-binding protein LnrL -
  ITP52_RS06205 (ITP52_06205) lnrK 1247442..1248104 (-) 663 WP_032726622.1 two-component system response regulator LnrK -
  ITP52_RS06210 (ITP52_06210) - 1248101..1249303 (-) 1203 WP_021481181.1 sensor histidine kinase -
  ITP52_RS06215 (ITP52_06215) catE 1249421..1250278 (-) 858 WP_043940077.1 catechol 2,3-dioxygenase -
  ITP52_RS06220 (ITP52_06220) catD 1250296..1250700 (-) 405 WP_041851163.1 DoxX family oxidoreductase CatD -
  ITP52_RS06225 (ITP52_06225) rcrQ 1250854..1252668 (-) 1815 WP_041851164.1 ABC transporter ATP-binding protein Regulator
  ITP52_RS06230 (ITP52_06230) yfiB 1252662..1254383 (-) 1722 WP_041851165.1 ABC transporter ATP-binding protein -
  ITP52_RS06235 (ITP52_06235) - 1254798..1257131 (-) 2334 WP_043940076.1 peptidase G2 autoproteolytic cleavage domain-containing protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67458.22 Da        Isoelectric Point: 9.5330

>NTDB_id=444980 ITP52_RS06225 WP_041851164.1 1250854..1252668(-) (rcrQ) [Bacillus subtilis strain SH1]
MLKDIRKPFQYPKLPIDKKEGAKKRAKAKDTKGTLRRIWSYLAERKGLLILVMLMVVISAIFGLLGPFVIGKAIDHFIVG
KTVSGLIPFLLLLLAIYIIQSLSLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSST
LNTSVIQILSSVITFVGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQQKNLGDLNGYIEESVSGAKVIK
AYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKVMNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEENAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAGQSIAFVGP
TGAGKTTVTNLIARFYEPNDGKILIDGIDIKTLTRASLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKTAN
AHSFIERLPKGYDTVLTQNGSGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHR
LNTIQRADQIVVLKDGEMIEKGSHDELIRQKGFYSDLYESQFEK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=444980 ITP52_RS06225 WP_041851164.1 1250854..1252668(-) (rcrQ) [Bacillus subtilis strain SH1]
ATGCTAAAAGACATCCGCAAGCCTTTCCAATATCCCAAACTGCCAATTGACAAAAAAGAAGGCGCGAAAAAGCGGGCGAA
AGCAAAGGATACAAAGGGCACACTGAGACGAATCTGGTCTTACTTGGCTGAAAGAAAAGGACTGCTCATACTTGTCATGC
TGATGGTTGTCATCAGCGCCATATTCGGGCTCCTTGGTCCCTTTGTGATCGGAAAGGCCATCGACCATTTTATCGTCGGG
AAAACGGTCAGCGGCTTGATTCCTTTTTTGCTTCTTCTGCTCGCTATCTATATCATTCAGTCCCTGTCGCTTTGGTTTCA
AAACTATTGGATGATTACGATCTCGCAGGGCACGGTTTTCAGAATGAGAAGCGAATTGTTCACCCATCTGCATGAGCTGC
CGATTCCATTTTTTGATAAACAGCGGCACGGCGAGCTGATGAGCCGGGTGACGAATGACATCGAAAATGTCAGTTCTACC
TTAAACACGTCAGTCATTCAAATTTTGTCAAGTGTGATCACCTTTGTCGGGACGATTGCGGTGATGCTGTACATGAGCCC
GCTCCTTACATTGATTACGCTGACCATTATTCCGGTGATGGCAGCGAGCCTGAAATGGATCACCAACCGAACGGGAAAGC
TGTTTAAAGAACAGCAGAAAAACCTTGGTGATCTGAATGGGTATATTGAGGAATCTGTTTCAGGCGCAAAGGTCATCAAA
GCATATTCACGTGAGAAGCAGATTACTGCTGAATTTCTCGAAAAAAACGCTGCACTCAAGACGTCGGGCTTTTGGGCGCA
GACGATTTCCGGGTTTATCCCGAAGGTCATGAACTCTTTGAATAACTTAAGCTTTACAATGATAGCGGCAATCGGCGGTT
TGTTTGCGCTGAAAGGCTGGATCTCGATCGGCTCCATCGTCGTCTTTGCCGAGTATTCAAGACAATTTACACGCCCTTTA
AACGATCTGGCCAACCAGTTTAATACGATGCTGTCCGCAATCGCCGGCGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
AGAAGAGCGCGAGGATGAAGAGAACGCCGTGCATCAGCCCATCCAAACAGGCAGCATTGAATTCCGCGATGTGTCCTTCG
GTTACGATAAAGGGCAGCAGACACTGAAGCATTTACAGTTTACCGTGCCTGCGGGGCAGTCCATCGCGTTTGTCGGACCG
ACGGGGGCGGGGAAGACAACCGTCACTAACCTTATCGCCCGTTTTTACGAGCCTAACGATGGAAAAATTTTAATCGACGG
TATAGATATTAAAACCCTTACTAGAGCAAGCCTCAGAAAAAACATGGGGTTTGTTCTTCAGGATTCTTTCTTATTTCAGG
GAACGATCAGAGAAAACATTCGCTACGGCAGGCTCGATGCTTCTGATCAGGAAGTCGAAGCCGCTGCAAAAACAGCGAAT
GCCCATAGTTTTATTGAAAGGCTACCAAAAGGGTATGACACCGTGCTGACGCAAAACGGTTCGGGCATCAGTCAAGGACA
GAAGCAGTTGATTTCTATAGCGAGGGCGGTGCTTGCCGATCCGGTTCTTCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACCGTTACAGAAGTCAACATTCAAGAAGCGCTCGCCCGTTTAATGGAAGGAAGAACAAGCGTCATCATTGCCCACAGG
CTGAACACCATTCAAAGAGCGGACCAGATTGTGGTGCTAAAAGATGGTGAAATGATTGAAAAAGGCAGCCATGACGAGCT
GATTCGGCAAAAAGGATTTTACAGTGACTTATATGAAAGCCAATTTGAGAAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.619

95.695

0.379