Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ITP52_RS04495 Genome accession   NZ_CP064818
Coordinates   930379..931296 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SH1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 925379..936296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS04470 (ITP52_04470) spx 925737..926132 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  ITP52_RS04475 (ITP52_04475) yjbC 926313..926891 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  ITP52_RS04480 (ITP52_04480) yjbB 927055..928272 (-) 1218 WP_120363325.1 MFS transporter -
  ITP52_RS04485 (ITP52_04485) oppF 928379..929296 (-) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  ITP52_RS04490 (ITP52_04490) oppD 929298..930374 (-) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  ITP52_RS04495 (ITP52_04495) amiD 930379..931296 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  ITP52_RS04500 (ITP52_04500) oppB 931300..932234 (-) 935 Protein_901 oligopeptide ABC transporter permease OppB -
  ITP52_RS04505 (ITP52_04505) oppA 932342..933979 (-) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  ITP52_RS04510 (ITP52_04510) trpS 934723..935715 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=444962 ITP52_RS04495 WP_003232954.1 930379..931296(-) (amiD) [Bacillus subtilis strain SH1]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=444962 ITP52_RS04495 WP_003232954.1 930379..931296(-) (amiD) [Bacillus subtilis strain SH1]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364