Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HK440_RS01015 Genome accession   NZ_CP053396
Coordinates   224029..224310 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain HPY     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 219029..229310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK440_RS00995 (HK440_00995) groES 219593..219949 (-) 357 WP_000671954.1 co-chaperone GroES -
  HK440_RS01000 (HK440_01000) dnaG 220238..221917 (+) 1680 WP_001917635.1 DNA primase -
  HK440_RS01005 (HK440_01005) - 221914..222966 (+) 1053 WP_001917636.1 MnmA/TRMU family protein -
  HK440_RS01010 (HK440_01010) - 223057..223884 (+) 828 WP_001917637.1 DUF5718 family protein -
  HK440_RS01015 (HK440_01015) comB2 224029..224310 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HK440_RS01020 (HK440_01020) comB3 224310..224573 (+) 264 WP_000584951.1 hypothetical protein Machinery gene
  HK440_RS01025 (HK440_01025) comB4 224575..226938 (+) 2364 WP_001917638.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HK440_RS01035 (HK440_01035) - 227245..228585 (+) 1341 WP_001917639.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=444766 HK440_RS01015 WP_001272690.1 224029..224310(+) (comB2) [Helicobacter pylori strain HPY]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=444766 HK440_RS01015 WP_001272690.1 224029..224310(+) (comB2) [Helicobacter pylori strain HPY]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1