Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HK440_RS00400 Genome accession   NZ_CP053396
Coordinates   89681..89965 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain HPY     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 84681..94965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK440_RS00370 (HK440_00370) - 85064..85405 (+) 342 WP_001917068.1 hypothetical protein -
  HK440_RS00375 (HK440_00375) - 85415..86326 (+) 912 WP_001917067.1 LPP20 family lipoprotein -
  HK440_RS00380 (HK440_00380) - 86676..87833 (-) 1158 WP_171407230.1 restriction endonuclease subunit S -
  HK440_RS00385 (HK440_00385) - 87842..88269 (-) 428 Protein_75 restriction endonuclease subunit M -
  HK440_RS00390 (HK440_00390) - 88313..89101 (+) 789 WP_001917655.1 hypothetical protein -
  HK440_RS00395 (HK440_00395) - 89205..89684 (+) 480 WP_000571125.1 hypothetical protein -
  HK440_RS00400 (HK440_00400) comB2 89681..89965 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  HK440_RS00405 (HK440_00405) comB3 89976..90239 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  HK440_RS00410 (HK440_00410) - 90250..90486 (+) 237 WP_001917654.1 hypothetical protein -
  HK440_RS00415 (HK440_00415) - 90486..93067 (+) 2582 Protein_81 VirB4 family type IV secretion/conjugal transfer ATPase -
  HK440_RS00420 (HK440_00420) - 93064..93198 (+) 135 WP_000738749.1 hypothetical protein -
  HK440_RS00425 (HK440_00425) - 93191..94360 (+) 1170 WP_001917653.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=444763 HK440_RS00400 WP_000736478.1 89681..89965(+) (comB2) [Helicobacter pylori strain HPY]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=444763 HK440_RS00400 WP_000736478.1 89681..89965(+) (comB2) [Helicobacter pylori strain HPY]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAACAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553