Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HK441_RS00410 Genome accession   NZ_CP053394
Coordinates   89977..90240 (+) Length   87 a.a.
NCBI ID   WP_001177712.1    Uniprot ID   A0AB33Z5Y9
Organism   Helicobacter pylori strain HP1352     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 84977..95240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK441_RS00375 (HK441_00375) - 85065..85406 (+) 342 WP_001917068.1 hypothetical protein -
  HK441_RS00380 (HK441_00380) - 85416..86327 (+) 912 WP_001917067.1 LPP20 family lipoprotein -
  HK441_RS00385 (HK441_00385) - 86677..87834 (-) 1158 WP_171407230.1 restriction endonuclease subunit S -
  HK441_RS00390 (HK441_00390) - 87843..88270 (-) 428 Protein_76 restriction endonuclease subunit M -
  HK441_RS00395 (HK441_00395) - 88314..89102 (+) 789 WP_001917655.1 hypothetical protein -
  HK441_RS00400 (HK441_00400) - 89206..89685 (+) 480 WP_000571125.1 hypothetical protein -
  HK441_RS00405 (HK441_00405) comB2 89682..89966 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  HK441_RS00410 (HK441_00410) comB3 89977..90240 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  HK441_RS00415 (HK441_00415) - 90251..90487 (+) 237 WP_001917654.1 hypothetical protein -
  HK441_RS00420 (HK441_00420) - 90487..93068 (+) 2582 Protein_82 VirB4 family type IV secretion/conjugal transfer ATPase -
  HK441_RS00425 (HK441_00425) - 93065..93199 (+) 135 WP_000738749.1 hypothetical protein -
  HK441_RS00430 (HK441_00430) - 93192..94361 (+) 1170 WP_001917653.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10002.89 Da        Isoelectric Point: 5.7206

>NTDB_id=444741 HK441_RS00410 WP_001177712.1 89977..90240(+) (comB3) [Helicobacter pylori strain HP1352]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=444741 HK441_RS00410 WP_001177712.1 89977..90240(+) (comB3) [Helicobacter pylori strain HP1352]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598