Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   HLK66_RS17370 Genome accession   NZ_CP053315
Coordinates   3514444..3516807 (-) Length   787 a.a.
NCBI ID   WP_123258039.1    Uniprot ID   -
Organism   Niallia circulans strain GN03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3509444..3521807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLK66_RS17355 (HLK66_17365) dtd 3510992..3511432 (-) 441 WP_095331657.1 D-aminoacyl-tRNA deacylase -
  HLK66_RS17360 (HLK66_17370) - 3511445..3513640 (-) 2196 WP_095331655.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  HLK66_RS17365 (HLK66_17375) - 3513941..3514453 (-) 513 WP_095331653.1 adenine phosphoribosyltransferase -
  HLK66_RS17370 (HLK66_17380) recJ 3514444..3516807 (-) 2364 WP_123258039.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  HLK66_RS17375 (HLK66_17385) - 3517027..3517326 (-) 300 WP_095331649.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  HLK66_RS17380 (HLK66_17390) secDF 3517464..3519716 (-) 2253 WP_095331647.1 protein translocase subunit SecDF -
  HLK66_RS17385 (HLK66_17395) - 3520073..3520378 (-) 306 WP_095331645.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 89356.17 Da        Isoelectric Point: 4.7857

>NTDB_id=444077 HLK66_RS17370 WP_123258039.1 3514444..3516807(-) (recJ) [Niallia circulans strain GN03]
MLRSKKRWIQEETSNQETISLLAEELKLAPIVASLLMKRGYHTSEEAKAFLFDDNNDFHDPFLLLGMDIAVDRIQKAITN
KELILIFGDYDADGVTSTTVMMKTLEGLGANVQFYIPNRFTEGYGPNERAFRYAKSIGVQLIITVDTGIAAVHEAEVAKE
LEIDLIITDHHEPGPILPEALAIIHPKIEGSEYPFRELAGVGVSFKLSHALYGKVPHHLLPFAAIGTIADLVSLTGENRL
LAKKGIRALQETDNIGLNALYRQMNIDKNTINEETIGFMLAPRINAIGRLGDADPAVDLLLTDDPEIAKELALEMEETNK
ERQAIVNQITVEAMEQVDELYPLNENRVLIVGKEGWNPGVVGIVASRLVEKYYRPTIVLSYDKETGIAKGSARSIEGFDL
YKNLSTCRDILPHFGGHPMAAGMSLKIEDVDVLRDSLNRLAFEQLTEENLIPLTKVDGSFSISDISIKSIEEMQMLAPFG
VDNPKPKLTFCDLEIDNMRKIGSNQNHLKIVLKDNEFELDGIGFGIGDLCDHISPSAKVSVLGELSINEWNNRKKPQIFI
QDMEVPHWQLFDYRSLRKVNQLYEVVPKNAQWIFFHQDSVPKDMDEQVSYQVIESIEQAAFLESMNNTMVLADYPPSLDM
LKTLLSNNAPERIYAVFYKQQSDFFSTMPTRDHFKWFYAFLAKQGNFHLQKFGGELARRKGWSKETVDFMSKVFFELNFV
TMKDGFISLNKNVPKRDLTESISFQQKQAQFELENELIYSSYEQLKNWFDLILKKSVNNEEEVKEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=444077 HLK66_RS17370 WP_123258039.1 3514444..3516807(-) (recJ) [Niallia circulans strain GN03]
ATGTTACGTTCCAAAAAAAGATGGATACAAGAAGAAACTTCTAATCAAGAAACTATTTCACTATTAGCAGAAGAGCTAAA
ACTAGCACCAATTGTAGCCTCTCTTTTAATGAAAAGAGGTTATCATACATCAGAGGAAGCAAAAGCTTTTTTATTTGATG
ATAATAATGATTTTCATGATCCTTTCCTGCTTTTAGGAATGGATATAGCTGTAGATCGAATACAAAAGGCAATTACTAAC
AAAGAATTAATTCTTATTTTTGGAGATTATGATGCCGATGGAGTAACTAGCACGACCGTTATGATGAAAACGTTAGAGGG
TCTTGGAGCCAATGTGCAATTTTATATTCCAAACCGATTTACCGAAGGATATGGCCCTAATGAGAGGGCTTTTCGCTATG
CTAAAAGCATTGGTGTTCAATTGATTATTACAGTCGATACGGGTATTGCTGCTGTTCATGAAGCGGAAGTGGCAAAAGAA
TTGGAAATAGACTTAATCATTACCGATCACCATGAGCCAGGACCAATATTGCCAGAGGCACTTGCGATCATTCACCCCAA
GATAGAAGGTAGCGAGTATCCGTTCCGTGAGTTAGCAGGGGTAGGCGTTTCTTTCAAGTTATCTCACGCTCTTTATGGAA
AAGTTCCCCATCATTTATTGCCATTTGCGGCAATTGGAACAATCGCTGATCTTGTCTCCTTAACAGGAGAAAATCGCCTT
CTTGCGAAAAAAGGCATCAGGGCACTGCAAGAAACAGATAATATCGGTTTAAATGCATTATATCGTCAAATGAATATCGA
CAAAAATACGATTAATGAAGAAACAATCGGATTTATGCTTGCACCACGTATTAATGCTATTGGCAGATTAGGAGATGCGG
ATCCGGCTGTTGACTTATTATTAACAGATGATCCAGAGATTGCAAAAGAACTAGCATTAGAAATGGAAGAAACAAATAAA
GAAAGACAAGCGATTGTAAATCAGATAACAGTGGAAGCGATGGAACAAGTGGACGAGCTCTATCCATTAAATGAAAATCG
TGTTCTAATTGTAGGGAAAGAGGGCTGGAACCCTGGCGTTGTGGGGATCGTTGCTTCTCGATTGGTAGAAAAGTACTATC
GACCAACGATTGTATTAAGTTATGACAAGGAAACGGGAATAGCAAAAGGATCTGCTCGCAGTATTGAGGGATTTGATTTA
TATAAAAATTTATCGACGTGTAGAGATATTCTGCCTCATTTTGGTGGGCATCCAATGGCTGCAGGAATGTCTTTGAAAAT
AGAAGATGTAGATGTTCTTAGAGATAGTTTAAATAGATTAGCCTTTGAACAATTAACAGAAGAAAATCTCATTCCATTAA
CAAAGGTGGATGGCAGCTTTTCAATAAGTGATATATCTATTAAATCAATAGAGGAAATGCAAATGCTCGCCCCATTTGGA
GTCGATAATCCCAAGCCTAAATTAACCTTCTGTGATCTAGAAATCGACAATATGCGGAAAATAGGTTCCAATCAAAACCA
TTTAAAGATTGTATTAAAAGATAATGAGTTTGAATTAGATGGAATAGGATTTGGAATTGGTGACTTATGTGATCATATCT
CTCCAAGTGCAAAAGTGTCTGTATTAGGGGAGCTTTCGATAAACGAATGGAATAATCGTAAAAAACCACAAATCTTTATT
CAAGATATGGAGGTTCCTCATTGGCAGCTGTTTGACTATCGAAGTTTAAGAAAAGTGAATCAATTATACGAAGTAGTGCC
TAAAAATGCACAGTGGATTTTTTTTCATCAAGATTCTGTTCCTAAGGATATGGATGAACAAGTCTCTTATCAGGTGATTG
AATCAATAGAGCAAGCAGCATTCCTAGAATCGATGAATAATACTATGGTACTGGCAGATTATCCCCCTAGTTTGGATATG
CTAAAAACATTGTTATCTAACAATGCTCCTGAAAGAATCTATGCTGTTTTTTATAAACAACAAAGTGACTTTTTTAGTAC
CATGCCAACTCGTGATCATTTTAAATGGTTCTATGCTTTTTTAGCAAAACAGGGGAATTTTCACCTGCAAAAATTCGGCG
GAGAGCTCGCTAGAAGAAAAGGTTGGAGTAAAGAAACGGTAGATTTTATGTCAAAGGTGTTTTTTGAATTAAATTTTGTT
ACAATGAAGGATGGATTTATTTCACTGAATAAGAATGTTCCAAAAAGAGATTTAACAGAATCTATCTCTTTTCAACAAAA
ACAAGCGCAATTTGAGCTGGAAAATGAATTAATTTATTCATCTTATGAACAACTTAAAAATTGGTTTGATCTTATTCTAA
AGAAATCCGTCAATAATGAGGAGGAAGTAAAAGAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-769)

DHHA1 domain (DHHA1)

(316-439)

RecJ OB domain (RecJ_OB)

(456-562)

DHH family (DHH)

(84-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.859

100

0.529