Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HLB41_RS08655 Genome accession   NZ_CP053289
Coordinates   1672927..1673706 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain WPySW2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667927..1678706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB41_RS08635 (HLB41_08650) trmFO 1668581..1669885 (+) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HLB41_RS08640 (HLB41_08655) xerC 1669951..1670850 (+) 900 WP_001101243.1 tyrosine recombinase XerC -
  HLB41_RS08645 (HLB41_08660) hslV 1670893..1671435 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  HLB41_RS08650 (HLB41_08665) hslU 1671458..1672849 (+) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  HLB41_RS08655 (HLB41_08670) codY 1672927..1673706 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HLB41_RS08660 (HLB41_08675) rpsB 1674054..1674755 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  HLB41_RS08665 (HLB41_08680) tsf 1674859..1675746 (+) 888 WP_001018578.1 translation elongation factor Ts -
  HLB41_RS08670 (HLB41_08685) pyrH 1675813..1676535 (+) 723 WP_000042668.1 UMP kinase -
  HLB41_RS08675 (HLB41_08690) frr 1676538..1677095 (+) 558 WP_000531501.1 ribosome recycling factor -
  HLB41_RS08680 (HLB41_08695) uppS 1677181..1677957 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=443916 HLB41_RS08655 WP_000421290.1 1672927..1673706(+) (codY) [Bacillus cereus strain WPySW2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=443916 HLB41_RS08655 WP_000421290.1 1672927..1673706(+) (codY) [Bacillus cereus strain WPySW2]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459