Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | HLB41_RS08655 | Genome accession | NZ_CP053289 |
| Coordinates | 1672927..1673706 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421290.1 | Uniprot ID | A0A9W5VKA1 |
| Organism | Bacillus cereus strain WPySW2 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1634085..1689151 | 1672927..1673706 | within | 0 |
Gene organization within MGE regions
Location: 1634085..1689151
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HLB41_RS08465 (HLB41_08480) | rsmB | 1634307..1635641 (+) | 1335 | WP_001249666.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| HLB41_RS08470 (HLB41_08485) | rlmN | 1635646..1636734 (+) | 1089 | WP_000450540.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| HLB41_RS08475 (HLB41_08490) | - | 1636739..1637491 (+) | 753 | WP_000648703.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| HLB41_RS08480 (HLB41_08495) | pknB | 1637500..1639473 (+) | 1974 | WP_000904747.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| HLB41_RS08485 (HLB41_08500) | rsgA | 1639720..1640601 (+) | 882 | WP_065212078.1 | ribosome small subunit-dependent GTPase A | - |
| HLB41_RS08490 (HLB41_08505) | rpe | 1640604..1641248 (+) | 645 | WP_065212077.1 | ribulose-phosphate 3-epimerase | - |
| HLB41_RS08495 (HLB41_08510) | - | 1641318..1641998 (+) | 681 | WP_000752665.1 | thiamine diphosphokinase | - |
| HLB41_RS08500 (HLB41_08515) | spoVM | 1642065..1642145 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| HLB41_RS08505 (HLB41_08520) | rpmB | 1642219..1642407 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| HLB41_RS08510 (HLB41_08525) | - | 1642784..1643146 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| HLB41_RS08515 (HLB41_08530) | - | 1643169..1644845 (+) | 1677 | WP_000027129.1 | DAK2 domain-containing protein | - |
| HLB41_RS08520 (HLB41_08535) | recG | 1645136..1647184 (+) | 2049 | WP_065212076.1 | ATP-dependent DNA helicase RecG | - |
| HLB41_RS08525 (HLB41_08540) | fapR | 1647273..1647866 (+) | 594 | WP_000747348.1 | transcription factor FapR | - |
| HLB41_RS08530 (HLB41_08545) | plsX | 1647863..1648855 (+) | 993 | WP_000684100.1 | phosphate acyltransferase PlsX | - |
| HLB41_RS08535 (HLB41_08550) | fabD | 1648870..1649814 (+) | 945 | WP_000515899.1 | ACP S-malonyltransferase | - |
| HLB41_RS08540 (HLB41_08555) | fabG | 1649814..1650554 (+) | 741 | WP_000911773.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| HLB41_RS08545 (HLB41_08560) | acpP | 1650624..1650857 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| HLB41_RS08550 (HLB41_08565) | rncS | 1650916..1651653 (+) | 738 | WP_001146875.1 | ribonuclease III | - |
| HLB41_RS08555 (HLB41_08570) | smc | 1651800..1655369 (+) | 3570 | WP_000478978.1 | chromosome segregation protein SMC | - |
| HLB41_RS08560 (HLB41_08575) | ftsY | 1655385..1656374 (+) | 990 | WP_000007655.1 | signal recognition particle-docking protein FtsY | - |
| HLB41_RS08565 (HLB41_08580) | - | 1656508..1656840 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| HLB41_RS08570 (HLB41_08585) | ffh | 1656853..1658202 (+) | 1350 | WP_000863460.1 | signal recognition particle protein | - |
| HLB41_RS08575 (HLB41_08590) | rpsP | 1658304..1658576 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| HLB41_RS08580 (HLB41_08595) | - | 1658591..1658818 (+) | 228 | WP_000737401.1 | KH domain-containing protein | - |
| HLB41_RS08585 (HLB41_08600) | rimM | 1658940..1659455 (+) | 516 | WP_000170278.1 | ribosome maturation factor RimM | - |
| HLB41_RS08590 (HLB41_08605) | trmD | 1659455..1660189 (+) | 735 | WP_000686903.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| HLB41_RS08595 (HLB41_08610) | rplS | 1660336..1660680 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| HLB41_RS08600 (HLB41_08615) | lepB | 1660782..1661333 (+) | 552 | WP_000711853.1 | signal peptidase I | - |
| HLB41_RS08605 (HLB41_08620) | ylqF | 1661354..1662244 (+) | 891 | WP_000236704.1 | ribosome biogenesis GTPase YlqF | - |
| HLB41_RS08610 (HLB41_08625) | - | 1662301..1663074 (+) | 774 | WP_001194265.1 | ribonuclease HII | - |
| HLB41_RS08615 (HLB41_08630) | sucC | 1663269..1664429 (+) | 1161 | WP_001020791.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| HLB41_RS08620 (HLB41_08635) | sucD | 1664449..1665351 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| HLB41_RS08625 (HLB41_08640) | dprA | 1665440..1666309 (+) | 870 | WP_000818059.1 | DNA-processing protein DprA | - |
| HLB41_RS08630 (HLB41_08645) | topA | 1666454..1668532 (+) | 2079 | WP_001286963.1 | type I DNA topoisomerase | - |
| HLB41_RS08635 (HLB41_08650) | trmFO | 1668581..1669885 (+) | 1305 | WP_000213002.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| HLB41_RS08640 (HLB41_08655) | xerC | 1669951..1670850 (+) | 900 | WP_001101243.1 | tyrosine recombinase XerC | - |
| HLB41_RS08645 (HLB41_08660) | hslV | 1670893..1671435 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| HLB41_RS08650 (HLB41_08665) | hslU | 1671458..1672849 (+) | 1392 | WP_000550078.1 | ATP-dependent protease ATPase subunit HslU | - |
| HLB41_RS08655 (HLB41_08670) | codY | 1672927..1673706 (+) | 780 | WP_000421290.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| HLB41_RS08660 (HLB41_08675) | rpsB | 1674054..1674755 (+) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| HLB41_RS08665 (HLB41_08680) | tsf | 1674859..1675746 (+) | 888 | WP_001018578.1 | translation elongation factor Ts | - |
| HLB41_RS08670 (HLB41_08685) | pyrH | 1675813..1676535 (+) | 723 | WP_000042668.1 | UMP kinase | - |
| HLB41_RS08675 (HLB41_08690) | frr | 1676538..1677095 (+) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| HLB41_RS08680 (HLB41_08695) | uppS | 1677181..1677957 (+) | 777 | WP_000971296.1 | isoprenyl transferase | - |
| HLB41_RS08685 (HLB41_08700) | cdsA | 1677975..1678766 (+) | 792 | WP_000813592.1 | phosphatidate cytidylyltransferase | - |
| HLB41_RS08690 (HLB41_08705) | dxr | 1678790..1679932 (+) | 1143 | WP_000790373.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| HLB41_RS08695 (HLB41_08710) | rseP | 1679950..1681206 (+) | 1257 | WP_001090244.1 | RIP metalloprotease RseP | - |
| HLB41_RS08700 (HLB41_08715) | - | 1681316..1683016 (+) | 1701 | WP_000814299.1 | proline--tRNA ligase | - |
| HLB41_RS08705 (HLB41_08720) | - | 1683141..1687442 (+) | 4302 | WP_000060005.1 | PolC-type DNA polymerase III | - |
| HLB41_RS08710 (HLB41_08725) | rimP | 1687779..1688249 (+) | 471 | WP_000359096.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28793.05 Da Isoelectric Point: 4.7165
>NTDB_id=443916 HLB41_RS08655 WP_000421290.1 1672927..1673706(+) (codY) [Bacillus cereus strain WPySW2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=443916 HLB41_RS08655 WP_000421290.1 1672927..1673706(+) (codY) [Bacillus cereus strain WPySW2]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.467 |
100 |
0.815 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |