Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ITG66_RS28840 Genome accession   NZ_CP064393
Coordinates   6209537..6210061 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain SRRSH1101     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6204537..6215061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG66_RS28825 (ITG66_28830) aroB 6205653..6206759 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  ITG66_RS28830 (ITG66_28835) aroK 6206809..6207327 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ITG66_RS28835 (ITG66_28840) pilQ 6207339..6209483 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  ITG66_RS28840 (ITG66_28845) comL/pilP 6209537..6210061 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ITG66_RS28845 (ITG66_28850) pilO 6210058..6210681 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ITG66_RS28850 (ITG66_28855) pilN 6210678..6211274 (-) 597 Protein_5720 type 4a pilus biogenesis protein PilN -
  ITG66_RS28855 (ITG66_28860) pilM 6211274..6212338 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ITG66_RS28860 (ITG66_28865) - 6212523..6214994 (+) 2472 WP_031756300.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=443903 ITG66_RS28840 WP_003095836.1 6209537..6210061(-) (comL/pilP) [Pseudomonas aeruginosa strain SRRSH1101]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=443903 ITG66_RS28840 WP_003095836.1 6209537..6210061(-) (comL/pilP) [Pseudomonas aeruginosa strain SRRSH1101]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACTATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362