Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ITG70_RS25470 Genome accession   NZ_CP064392
Coordinates   5432464..5432889 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain SRRSH15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5427464..5437889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG70_RS25455 (ITG70_25460) pilX 5428028..5428615 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  ITG70_RS25460 (ITG70_25465) pilY1 5428627..5432118 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  ITG70_RS25465 (ITG70_25470) pilY2 5432120..5432467 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  ITG70_RS25470 (ITG70_25475) comF 5432464..5432889 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  ITG70_RS25475 (ITG70_25480) ispH 5432936..5433880 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ITG70_RS25480 (ITG70_25485) fkpB 5433966..5434406 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ITG70_RS25485 (ITG70_25490) lspA 5434399..5434908 (-) 510 WP_003102615.1 signal peptidase II -
  ITG70_RS25490 (ITG70_25495) ileS 5434901..5437732 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=443795 ITG70_RS25470 WP_003094721.1 5432464..5432889(+) (comF) [Pseudomonas aeruginosa strain SRRSH15]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=443795 ITG70_RS25470 WP_003094721.1 5432464..5432889(+) (comF) [Pseudomonas aeruginosa strain SRRSH15]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383