Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HL650_RS11875 Genome accession   NZ_CP053228
Coordinates   2427747..2429591 (-) Length   614 a.a.
NCBI ID   WP_279290022.1    Uniprot ID   -
Organism   Blautia pseudococcoides strain SCSK     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2422747..2434591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HL650_RS11860 (HL650_11915) - 2423100..2423453 (+) 354 WP_065541021.1 ArsR/SmtB family transcription factor -
  HL650_RS11865 (HL650_11920) - 2423975..2426182 (-) 2208 WP_171285989.1 DNA topoisomerase III -
  HL650_RS11870 (HL650_11925) aroF 2426187..2427197 (-) 1011 WP_171285990.1 3-deoxy-7-phosphoheptulonate synthase -
  HL650_RS28155 - 2427609..2427731 (-) 123 WP_369858175.1 DUF6783 domain-containing protein -
  HL650_RS11875 (HL650_11930) rcrQ 2427747..2429591 (-) 1845 WP_279290022.1 ABC transporter ATP-binding protein Regulator
  HL650_RS11880 (HL650_11935) - 2429584..2431749 (-) 2166 WP_171285991.1 ABC transporter ATP-binding protein -
  HL650_RS11885 (HL650_11940) - 2431768..2432202 (-) 435 WP_065541015.1 MarR family winged helix-turn-helix transcriptional regulator -
  HL650_RS11890 (HL650_11945) - 2432443..2433831 (-) 1389 WP_065541014.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68518.41 Da        Isoelectric Point: 7.0074

>NTDB_id=443624 HL650_RS11875 WP_279290022.1 2427747..2429591(-) (rcrQ) [Blautia pseudococcoides strain SCSK]
MSNTARRPRGPMGGHGKGMPGEKAKDFKGAMKRLVKYMERYKFRLMLMILFAVGGTVFNIVGPKILGKATTELFNGLVSK
INGGSGINFDKIVQILLGCLCLYLVSALLSFIQGFIMTGISNDVTYSLRKDISQKINRIPMKYFESRTHGEILSRITNDV
DTLQMGINQSVTQLITSCTTLIGVLVMMLSINVWMTLAALLILPISMAIISKVMKHSQKYFQAQQKYLGEVNGQVEEIYS
GHNVVKAFNKEESVIGEFEKTNEKLYSSAWRSQFFSGMMMPIMQFVGNLGYVMVALLGGFMVIKSKIEVGDVQAFFQYIR
NFTQPIQQIAQVTNMLQSSAAASERVFEFLDVEEEVQTVENPADVSHIDGNVEICHTSFGYDPDKIIIHDFSASVKAGQK
VAIVGPTGAGKTTMIKLLMRFYDVNTGEILIDGHNIKDFNRSELRELFGMVLQDTWLFHGTIMENIRYGRLDATDEEVIA
AAKAAHAHHFIMSQPGGYQMVLNEETNNISQGQKQLLTIARAILADNRILILDEATSSVDTRTEERIQKAMDNLMKGRTS
FVIAHRLSTIRDADLILVMKDGDIIEQGTHEALLEAGGFYANLYNSQFERAEAM

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=443624 HL650_RS11875 WP_279290022.1 2427747..2429591(-) (rcrQ) [Blautia pseudococcoides strain SCSK]
ATGAGTAATACTGCGAGAAGACCGAGAGGGCCGATGGGTGGTCACGGAAAAGGAATGCCGGGGGAGAAGGCAAAAGATTT
TAAGGGAGCCATGAAACGCCTGGTGAAATACATGGAACGGTATAAGTTCCGTTTGATGCTGATGATCCTGTTTGCTGTGG
GAGGCACGGTATTTAATATTGTGGGACCTAAGATTTTAGGCAAGGCCACCACAGAGCTGTTTAACGGACTGGTATCCAAG
ATAAACGGCGGCAGTGGGATCAATTTTGACAAGATTGTTCAGATCCTTTTGGGATGCCTCTGCCTGTACCTGGTCAGCGC
CCTGCTGTCCTTTATTCAGGGATTTATCATGACCGGGATATCCAATGATGTGACGTACAGCCTGAGAAAAGATATTTCCC
AGAAGATCAACAGAATTCCCATGAAATATTTTGAGAGCAGAACCCACGGTGAGATCCTTTCACGTATCACCAATGATGTA
GATACTCTGCAGATGGGAATCAACCAGAGTGTGACCCAGCTCATTACCTCCTGCACCACGTTGATCGGTGTGCTTGTGAT
GATGCTGAGTATCAATGTATGGATGACACTGGCGGCCCTGCTGATCCTGCCTATATCCATGGCGATCATCAGTAAAGTCA
TGAAACATTCCCAGAAGTATTTCCAGGCACAGCAGAAATATCTGGGTGAAGTAAACGGGCAGGTGGAGGAAATCTACAGC
GGACACAACGTGGTAAAGGCCTTCAACAAGGAAGAGTCCGTGATCGGTGAATTTGAAAAGACAAACGAAAAGCTGTACAG
CTCTGCATGGCGTTCCCAGTTTTTCTCCGGCATGATGATGCCCATCATGCAGTTTGTGGGAAATCTGGGATATGTGATGG
TTGCCCTTCTGGGTGGATTTATGGTAATTAAGAGCAAGATTGAAGTGGGGGATGTGCAGGCGTTTTTCCAGTATATCAGA
AACTTTACGCAGCCTATCCAGCAGATCGCCCAGGTGACAAATATGCTGCAGTCTTCAGCCGCTGCATCTGAGAGGGTGTT
TGAATTTCTGGATGTTGAGGAGGAAGTGCAGACTGTGGAAAATCCCGCAGATGTAAGCCATATTGACGGCAATGTGGAAA
TCTGCCATACTTCTTTCGGCTATGATCCGGATAAGATCATTATCCACGATTTCTCTGCTTCCGTAAAAGCAGGGCAGAAA
GTAGCAATTGTAGGACCGACGGGTGCCGGCAAGACTACCATGATCAAGCTGCTGATGCGGTTCTATGATGTGAATACGGG
AGAAATCCTCATTGACGGTCATAATATTAAAGACTTTAACAGAAGTGAGCTGCGGGAATTGTTCGGTATGGTACTGCAGG
ATACCTGGCTGTTCCACGGGACCATTATGGAAAATATCCGCTATGGACGGCTGGATGCCACAGACGAAGAAGTGATCGCA
GCGGCGAAAGCAGCACACGCACATCATTTCATTATGTCACAGCCGGGCGGTTACCAGATGGTGCTGAATGAGGAGACAAA
CAATATTTCCCAGGGACAGAAACAGCTTCTGACCATTGCCAGGGCGATTCTGGCGGATAACAGGATCCTGATCCTGGATG
AGGCTACCTCCTCTGTGGATACCAGAACAGAAGAACGGATTCAGAAGGCCATGGATAACCTGATGAAGGGCAGGACCAGC
TTTGTGATTGCCCATCGTCTTTCTACGATCCGGGATGCGGATTTGATTCTGGTCATGAAAGACGGAGATATCATTGAACA
GGGTACCCATGAAGCACTGCTTGAAGCAGGCGGGTTCTATGCGAATCTGTATAACAGCCAGTTTGAGAGGGCCGAGGCAA
TGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(389-537)

ABC transporter transmembrane region (ABC_membrane)

(45-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.947

94.625

0.482