Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IUJ44_RS04905 Genome accession   NZ_CP064375
Coordinates   1071246..1072511 (-) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1066246..1077511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ44_RS04875 (IUJ44_04870) pncA 1066467..1067111 (-) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -
  IUJ44_RS04880 (IUJ44_04875) dapA 1067441..1068334 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  IUJ44_RS04885 (IUJ44_04880) - 1068350..1068952 (+) 603 WP_001177091.1 hypothetical protein -
  IUJ44_RS04890 (IUJ44_04885) purC 1068990..1069709 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  IUJ44_RS04895 (IUJ44_04890) - 1069902..1070105 (+) 204 WP_000418560.1 hypothetical protein -
  IUJ44_RS04900 (IUJ44_04895) - 1070391..1071230 (+) 840 WP_000349489.1 formate/nitrite transporter family protein -
  IUJ44_RS04905 (IUJ44_04900) rarA 1071246..1072511 (-) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  IUJ44_RS04910 (IUJ44_04905) - 1072617..1073786 (-) 1170 WP_074162152.1 PQQ-dependent sugar dehydrogenase -
  IUJ44_RS04915 (IUJ44_04910) - 1073899..1074357 (-) 459 WP_000102818.1 YcgN family cysteine cluster protein -
  IUJ44_RS04920 (IUJ44_04915) - 1074552..1074710 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  IUJ44_RS04925 (IUJ44_04920) - 1074882..1075619 (+) 738 WP_000100765.1 dienelactone hydrolase family protein -
  IUJ44_RS04930 (IUJ44_04925) - 1075805..1076167 (+) 363 WP_000130110.1 HIT family protein -
  IUJ44_RS04935 (IUJ44_04930) mutY 1076308..1077342 (+) 1035 WP_001113869.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=443249 IUJ44_RS04905 WP_001285409.1 1071246..1072511(-) (rarA) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=443249 IUJ44_RS04905 WP_001285409.1 1071246..1072511(-) (rarA) [Acinetobacter baumannii strain PartI-Abaumannii-RM8376 isolate ATCC isolate]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCAGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAAACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAATATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCAGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCCGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAT
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTCTAGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387