Detailed information NTG0442841

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: IUD20_RS03555
• Genome accession: NZ_CP064334
• Coordinates: 835453..836814 (+)
• Length: 453 a.a.
• NCBI ID: WP_011097739.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 830453..841814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD20_RS03545 (IUD20_03545)	-	832213..834123 (+)	1911	WP_004089128.1	DUF3857 domain-containing transglutaminase family protein	-
IUD20_RS03550 (IUD20_03550)	lolA	834685..835311 (+)	627	WP_004089126.1	outer membrane lipoprotein chaperone LolA	-
IUD20_RS03555 (IUD20_03555)	rarA	835453..836814 (+)	1362	WP_011097739.1	replication-associated recombination protein A	Machinery gene
IUD20_RS03560 (IUD20_03560)	crcB	836975..837376 (+)	402	WP_004089119.1	fluoride efflux transporter CrcB	-
IUD20_RS03565 (IUD20_03565)	-	838071..839546 (+)	1476	WP_181446091.1	hybrid sensor histidine kinase/response regulator	-
IUD20_RS03570 (IUD20_03570)	folK	839671..840195 (+)	525	WP_038231892.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
IUD20_RS03575 (IUD20_03575)	-	840206..840943 (-)	738	WP_004089106.1	pteridine reductase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50554.75 Da
• Isoelectric Point: 6.7781

>NTDB_id=442841 IUD20_RS03555 WP_011097739.1 835453..836814(+) (rarA) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8]
MTRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLDPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHY
IDAEFRSVSAVLSGLPEVRQILADAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSAL
LSRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIAAELAQDEQITADLLS
QVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRIAIEDIGLADPRAQSMALEAW
DIYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENG
VALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDWLRAARAQIQADKPQPPRA

Nucleotide

• Length: 1362 bp

>NTDB_id=442841 IUD20_RS03555 WP_011097739.1 835453..836814(+) (rarA) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-8]
GTGACACGACAGCGCTTTCCGACTCTTCAGCATGATTTGCTTGGTGTGGCTCCTCTCTTGCAGCCACTGGCCGAGCGCAT
GCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGACCCAGATCGTGCATTGCATCGTGCGGTTGCTT
CCGGGCATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATTAC
ATTGATGCAGAATTTCGGTCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGACGCTGCGCA
GCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTTTC
TGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGTTA
CTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATTGTTGTGGCATTGCAGCGGGCGTTGCAGGA
TACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTCAAGCCTCTCTGTTGGAGATTGCCAAGGCTGCAGATGGTG
ACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGCAGATAACCGCTGACTTGCTTTCG
CAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTGCACAAGAG
TGTACGTAGTTCCAACCCGGATGCGGCATTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTATCTACTTGG
CCCGGCGCTTGACCCGCATAGCGATTGAGGATATTGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGGAGGCTTGG
GATATCTATGAGCGGTTGGGTAGCCCGGAGGGAGATCTGGCGTTCGCGCAGTTGGTGCTGTACTTGGCAAGTACAGCAAA
ATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACTCAGGATGTTCCGCTACATC
TGCGCAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGAGTATCAGTACGATCATGATGCTGAGAACGGT
GTTGCGCTGGAACAGACTTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTATCAACCGGTATCCCGCGGTCTGGAGAT
TAAGCTGAAGGAGAAGTTGGACTGGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCCGCCGCGTGCAT
AG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (194-269)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (27-146)

• MgsA AAA+ ATPase C terminal (MgsA_C) (271-436)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.243	93.377	0.366