Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HFR56_RS20825 Genome accession   NZ_CP053055
Coordinates   4310931..4311461 (-) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Saintpaul strain CVM 22543     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4305931..4316461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFR56_RS20810 (HFR56_20810) siiC 4306564..4307883 (-) 1320 WP_001541306.1 SPI-4 type I secretion system protein SiiC -
  HFR56_RS20815 (HFR56_20815) - 4307873..4309261 (-) 1389 WP_000875195.1 MotA/TolQ/ExbB proton channel family protein -
  HFR56_RS20820 (HFR56_20820) siiA 4309258..4309890 (-) 633 WP_000389233.1 SPI-4 type I secretion system auxiliary protein SiiA -
  HFR56_RS20825 (HFR56_20825) ssb 4310931..4311461 (-) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HFR56_RS20830 (HFR56_20830) uvrA 4311709..4314534 (+) 2826 WP_000357724.1 excinuclease ABC subunit UvrA -
  HFR56_RS20835 (HFR56_20835) - 4314666..4315121 (+) 456 WP_000432207.1 hypothetical protein -
  HFR56_RS20840 (HFR56_20840) - 4315108..4315446 (+) 339 WP_000146593.1 membrane protein -
  HFR56_RS20845 (HFR56_20845) - 4315447..4315803 (-) 357 WP_000155666.1 MmcQ/YjbR family DNA-binding protein -
  HFR56_RS20850 (HFR56_20850) - 4315806..4316222 (-) 417 WP_000270393.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=442525 HFR56_RS20825 WP_000168322.1 4310931..4311461(-) (ssb) [Salmonella enterica subsp. enterica serovar Saintpaul strain CVM 22543]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=442525 HFR56_RS20825 WP_000168322.1 4310931..4311461(-) (ssb) [Salmonella enterica subsp. enterica serovar Saintpaul strain CVM 22543]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477