Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IMX21_RS17370 Genome accession   NZ_CP064167
Coordinates   3582003..3582470 (-) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli O157:H7 strain Wll001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3577003..3587470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX21_RS17345 (IMX21_17345) rpsG 3577144..3577614 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  IMX21_RS17350 (IMX21_17350) fusA 3577711..3579825 (+) 2115 WP_000124700.1 elongation factor G -
  IMX21_RS17355 (IMX21_17355) tuf 3579896..3581080 (+) 1185 WP_000031783.1 elongation factor Tu -
  IMX21_RS17360 (IMX21_17360) bfd 3581263..3581457 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  IMX21_RS17365 (IMX21_17365) bfr 3581530..3582006 (+) 477 WP_000675516.1 bacterioferritin -
  IMX21_RS17370 (IMX21_17370) pilD 3582003..3582470 (-) 468 WP_000381746.1 A24 family peptidase Machinery gene
  IMX21_RS17375 (IMX21_17375) rpsJ 3582849..3583160 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  IMX21_RS17380 (IMX21_17380) rplC 3583193..3583822 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  IMX21_RS17385 (IMX21_17385) rplD 3583833..3584438 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  IMX21_RS17390 (IMX21_17390) rplW 3584435..3584737 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  IMX21_RS17395 (IMX21_17395) rplB 3584755..3585576 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  IMX21_RS17400 (IMX21_17400) rpsS 3585593..3585871 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  IMX21_RS17405 (IMX21_17405) rplV 3585886..3586218 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  IMX21_RS17410 (IMX21_17410) rpsC 3586236..3586937 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  IMX21_RS17415 (IMX21_17415) rplP 3586950..3587360 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=442430 IMX21_RS17370 WP_000381746.1 3582003..3582470(-) (pilD) [Escherichia coli O157:H7 strain Wll001]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=442430 IMX21_RS17370 WP_000381746.1 3582003..3582470(-) (pilD) [Escherichia coli O157:H7 strain Wll001]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387