Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HMPREF1038_RS08610 Genome accession   NC_018630
Coordinates   1614961..1616232 (+) Length   423 a.a.
NCBI ID   WP_001113215.1    Uniprot ID   -
Organism   Streptococcus pneumoniae gamPNI0373     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1609961..1621232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS08575 (HMPREF1038_01747) - 1611026..1611454 (-) 429 WP_000418168.1 NUDIX hydrolase -
  HMPREF1038_RS08580 (HMPREF1038_01748) - 1611435..1612523 (-) 1089 WP_000719722.1 site-2 protease family protein -
  HMPREF1038_RS08585 (HMPREF1038_01749) - 1612542..1613012 (-) 471 WP_000257097.1 DUF3013 family protein -
  HMPREF1038_RS08590 (HMPREF1038_01750) - 1613303..1613755 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  HMPREF1038_RS08595 (HMPREF1038_01751) - 1613792..1613971 (-) 180 WP_001132283.1 type II toxin-antitoxin system HicA family toxin -
  HMPREF1038_RS08600 (HMPREF1038_01752) - 1614108..1614287 (-) 180 WP_001809903.1 hypothetical protein -
  HMPREF1038_RS08605 (HMPREF1038_01753) - 1614452..1614691 (-) 240 WP_000818079.1 hypothetical protein -
  HMPREF1038_RS08610 (HMPREF1038_01754) rarA 1614961..1616232 (+) 1272 WP_001113215.1 replication-associated recombination protein A Machinery gene
  HMPREF1038_RS08620 (HMPREF1038_01757) - 1616777..1618096 (-) 1320 WP_001844947.1 glycoside hydrolase family 32 protein -
  HMPREF1038_RS08625 (HMPREF1038_01758) - 1618106..1618951 (-) 846 WP_000819520.1 carbohydrate ABC transporter permease -
  HMPREF1038_RS08630 (HMPREF1038_01759) - 1618953..1619855 (-) 903 WP_000032531.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 47008.42 Da        Isoelectric Point: 5.9140

>NTDB_id=44230 HMPREF1038_RS08610 WP_001113215.1 1614961..1616232(+) (rarA) [Streptococcus pneumoniae gamPNI0373]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=44230 HMPREF1038_RS08610 WP_001113215.1 1614961..1616232(+) (rarA) [Streptococcus pneumoniae gamPNI0373]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTATCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCCGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.435

96.69

0.565

Multiple sequence alignment