Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IPZ77_RS26485 Genome accession   NZ_CP064057
Coordinates   5758985..5760349 (+) Length   454 a.a.
NCBI ID   WP_030727119.1    Uniprot ID   -
Organism   Streptomyces sp. XC 2026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5753985..5765349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPZ77_RS26465 (IPZ77_26470) - 5755246..5756091 (-) 846 WP_200368396.1 peptidylprolyl isomerase -
  IPZ77_RS26470 (IPZ77_26475) - 5756211..5756924 (+) 714 WP_200368397.1 MBL fold metallo-hydrolase -
  IPZ77_RS26475 (IPZ77_26480) hisS 5756937..5758199 (+) 1263 WP_200368398.1 histidine--tRNA ligase -
  IPZ77_RS26480 (IPZ77_26485) - 5758295..5758930 (+) 636 WP_030727121.1 vitamin K epoxide reductase family protein -
  IPZ77_RS26485 (IPZ77_26490) rarA 5758985..5760349 (+) 1365 WP_030727119.1 replication-associated recombination protein A Machinery gene
  IPZ77_RS26490 (IPZ77_26495) - 5760381..5761166 (-) 786 WP_200368399.1 DUF2470 domain-containing protein -
  IPZ77_RS26495 (IPZ77_26500) rpsD 5761222..5761833 (+) 612 WP_043176910.1 30S ribosomal protein S4 -
  IPZ77_RS26500 (IPZ77_26505) - 5761853..5764021 (-) 2169 WP_234390109.1 AAA family ATPase -
  IPZ77_RS26505 (IPZ77_26510) - 5764305..5764739 (+) 435 WP_200368401.1 DUF948 domain-containing protein -
  IPZ77_RS26510 (IPZ77_26515) - 5764751..5765107 (+) 357 WP_200368402.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48324.69 Da        Isoelectric Point: 6.4427

>NTDB_id=441517 IPZ77_RS26485 WP_030727119.1 5758985..5760349(+) (rarA) [Streptomyces sp. XC 2026]
MEPDLFTAAAEDRQERDPSASPLAVRMRPRTLEEVLGQRHLLRPGSPLRRLVGEGGGGPAGPSSVILWGPPGTGKTTLAH
VVSKATDKRFVELSAITAGVKEVRSVIEGARRSSGAYARDTVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTEEDLRGLLHRAVAAERGLNGAVGLPEDSEAHLLRIAGGDARRALTALEAGAGAALAKGEPE
ITLASLEEAVDRAAVTYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGMADPTAL
TTAVAAAQAVAMIGFPEASLTLSQAVIALALAPKSNAATVAIGAALADVRAGLAGPVPEHLRDAHYKGAQKLGHGAGYQY
PHDLPDGIAAQQYAPDAVRDKRYYQPTRRGAEARYADVAERVRERLAGNRDPRP

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=441517 IPZ77_RS26485 WP_030727119.1 5758985..5760349(+) (rarA) [Streptomyces sp. XC 2026]
GTGGAGCCCGATCTGTTCACCGCCGCCGCGGAAGACCGTCAGGAGCGCGACCCGTCCGCCAGCCCGCTGGCCGTACGGAT
GCGTCCGCGCACGCTGGAGGAGGTCCTGGGGCAGCGCCACCTGCTGCGCCCGGGGTCGCCGCTGCGCCGGCTGGTGGGGG
AGGGGGGCGGAGGTCCCGCCGGCCCCTCCTCGGTGATCCTGTGGGGGCCGCCGGGCACCGGCAAGACCACGCTCGCCCAC
GTGGTCAGCAAGGCCACCGACAAGCGCTTCGTGGAGTTGTCGGCGATCACCGCGGGGGTCAAGGAGGTGCGCTCGGTCAT
CGAGGGCGCCCGCCGTTCCTCCGGCGCCTACGCCCGGGACACCGTGCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCGCTGCTGCCGGCGGTGGAGAACCGCTGGGTGACGCTGATCGCCGCCACCACGGAGAATCCTTACTTC
TCGGTGATCTCACCGCTGCTGTCCCGCTCGCTGCTGCTGACCCTGGAGCCGCTGACGGAGGAGGACCTGCGCGGGCTGCT
GCACCGCGCGGTGGCCGCCGAGCGCGGGCTGAACGGGGCGGTGGGGCTCCCGGAGGACAGCGAGGCCCATCTGCTGCGGA
TCGCCGGGGGTGACGCCCGGCGGGCGCTCACGGCGCTGGAGGCCGGAGCGGGAGCGGCGCTGGCCAAGGGGGAGCCGGAG
ATCACCCTGGCCTCCCTGGAGGAGGCCGTGGACCGGGCCGCCGTCACCTACGACCGGGACGGCGACCAGCACTACGACGT
CGCCAGTGCGCTGATCAAGTCGATCCGCGGCTCGGACGTGGACGCGGCGCTGCACTACCTGGCGCGGATGATCGAGGCGG
GGGAGGACCCGCGGTTCATCGCCAGACGGCTGATGATCTCGGCGAGCGAGGACATCGGGATGGCCGATCCGACCGCGCTG
ACCACGGCGGTGGCGGCGGCGCAGGCGGTGGCGATGATCGGGTTCCCCGAGGCGTCGCTGACCCTGAGCCAGGCCGTGAT
CGCGCTGGCCCTGGCACCCAAGTCCAACGCGGCCACGGTGGCGATCGGCGCCGCGCTCGCGGACGTCAGGGCGGGGCTGG
CGGGCCCGGTGCCCGAGCACCTGCGGGACGCCCACTACAAGGGCGCGCAGAAGCTGGGGCACGGGGCGGGCTACCAGTAC
CCGCACGATCTGCCGGACGGTATCGCCGCCCAGCAGTACGCGCCGGACGCGGTCCGCGACAAGCGTTACTACCAGCCGAC
CCGGCGGGGCGCCGAGGCCCGGTACGCGGATGTCGCCGAGCGGGTACGGGAGCGGCTGGCGGGCAACCGGGACCCCCGCC
CGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

AAA C-terminal domain (AAA_assoc_2)

(200-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.116

94.714

0.427