Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HHK01_RS10620 Genome accession   NZ_CP052135
Coordinates   2143723..2146095 (-) Length   790 a.a.
NCBI ID   WP_170007768.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2138723..2151095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS10600 alaS 2138915..2141548 (-) 2634 WP_170007764.1 alanine--tRNA ligase -
  HHK01_RS10605 - 2141878..2142945 (-) 1068 WP_170007765.1 AI-2E family transporter -
  HHK01_RS10610 - 2143032..2143226 (-) 195 WP_170007766.1 hypothetical protein -
  HHK01_RS10615 - 2143189..2143710 (-) 522 WP_170007767.1 PRC-barrel domain-containing protein -
  HHK01_RS10620 recD2 2143723..2146095 (-) 2373 WP_170007768.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HHK01_RS10625 - 2146111..2146776 (-) 666 WP_170007769.1 tetratricopeptide repeat protein -
  HHK01_RS10630 mnmA 2146905..2148026 (-) 1122 WP_170007770.1 tRNA 2-thiouridine(34) synthase MnmA -
  HHK01_RS10635 - 2148131..2149279 (-) 1149 WP_170007771.1 cysteine desulfurase family protein -
  HHK01_RS10640 cymR 2149311..2149733 (-) 423 WP_170007772.1 cysteine metabolism transcriptional regulator CymR -
  HHK01_RS10645 - 2149730..2150401 (-) 672 WP_228027549.1 YitT family protein -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 88171.33 Da        Isoelectric Point: 4.8853

>NTDB_id=441449 HHK01_RS10620 WP_170007768.1 2143723..2146095(-) (recD2) [Bacillus fonticola strain CS13]
MTTAEETSTYVKGRPFVTIFRNEDTFYTVCRIRLQETNLPSYAEKELAVTGHFPKLLEGELYTFIGKLIEHPRFGVQFTA
EQYEKELPKTKDGLITYLSSDLFEGIGQKTAAAIVDALGENAISRILDDESVLDGISQLSTQKRKTFVAALRTHEGMERV
MIGLQQLGFGAQLSMKLFQQYREQTLEIIHENPYRLVSDIEGVGFFRADELGETLGMEADHPSRIRAGVFHALEVGSLQN
GHVYSEERVVMHDSMNLLSRRGKVTGEQLAKAMQELVEEGLAVCEDDRWYLPSLYYAEVGFTTHATRLLQSEEESYSESE
FLLSLGALEERAKIYYAESQQEAIQTALTSPLMVLTGGPGTGKTTVIKGIVELFAELHGISLNLADYKNKEEAFPVVLCA
PTGRAAKRMSEATGLPASTIHRLLKWNGEATFDHNEDHPLDGKLLIVDEFSMVDMWLANQLFQSIPAGMKVVLVGDEDQL
PSVGPGQVLADLIQADVLPTVQLTDIFRQENGSSIVTLAHEMKKGKLPTDIREKKGDRSFISCRTDQVNEAIQKVIGNAV
AKGYPAKDIQVLAPMYRGTAGITALNESLQSLLNPPEKGKREIKFGDIVFRRGDKVLQLVNRPEDNVYNGDMGEVVAIHF
AKETEQKTDMMTVSFDGVEVTYERKELIEMTHAYCCSIHKSQGSEFPIVVLPVVRGHARMLRRKLLYTAVTRSKQFLILC
GELDAFSRGVTTEEDVVRQTSLVKRLRDRSSHNEAPLAADESFDLQAIDPMIGMENVTPYDFLNDDDTTV

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=441449 HHK01_RS10620 WP_170007768.1 2143723..2146095(-) (recD2) [Bacillus fonticola strain CS13]
ATGACAACCGCAGAAGAAACTAGTACGTATGTAAAAGGTCGCCCGTTCGTGACGATCTTTCGAAATGAAGATACGTTTTA
CACGGTATGTCGTATTCGTCTTCAGGAGACGAATCTCCCCTCCTACGCAGAGAAGGAATTAGCCGTCACTGGTCATTTTC
CTAAGCTATTGGAAGGTGAGCTTTATACGTTTATTGGAAAGCTAATTGAGCACCCTAGATTTGGCGTCCAATTTACCGCT
GAACAATACGAAAAAGAGCTACCGAAAACGAAAGATGGGCTCATTACATACTTATCAAGCGACCTATTTGAAGGAATAGG
ACAAAAAACGGCTGCAGCTATTGTGGATGCGCTTGGAGAGAACGCTATTTCACGTATTCTTGACGATGAATCTGTTTTAG
ATGGGATTTCCCAACTATCTACTCAAAAAAGAAAAACATTTGTTGCAGCGCTGCGCACCCATGAAGGAATGGAGCGGGTA
ATGATTGGTCTACAGCAGCTAGGGTTTGGTGCTCAGCTCTCGATGAAACTATTTCAACAGTATCGGGAACAAACGCTTGA
GATTATTCATGAGAACCCGTATCGCCTAGTATCGGATATAGAGGGTGTTGGTTTTTTTCGTGCAGATGAGCTAGGAGAAA
CACTTGGCATGGAAGCAGATCACCCGTCACGTATTCGCGCTGGTGTATTCCACGCTCTCGAGGTCGGTTCCTTACAAAAT
GGACATGTGTACAGTGAGGAACGGGTGGTTATGCACGACAGTATGAATCTACTTTCACGTAGAGGAAAGGTCACTGGTGA
ACAACTCGCAAAGGCGATGCAGGAACTCGTAGAAGAAGGTCTTGCTGTTTGTGAAGATGACAGGTGGTACTTGCCGTCTC
TTTATTATGCAGAGGTGGGCTTTACGACACACGCGACGAGACTATTGCAAAGCGAAGAGGAATCGTACAGTGAGTCAGAA
TTTTTGCTCTCGCTTGGGGCTCTAGAGGAAAGAGCAAAAATCTATTATGCAGAAAGTCAACAGGAAGCGATCCAAACAGC
ACTTACCTCACCACTCATGGTGTTAACTGGTGGACCTGGAACAGGGAAGACGACTGTTATTAAGGGCATTGTGGAGTTGT
TTGCCGAGCTACATGGAATCAGTCTCAATTTAGCTGATTACAAAAATAAAGAAGAAGCTTTCCCAGTAGTCCTTTGTGCC
CCAACAGGTCGGGCTGCTAAACGGATGAGTGAGGCTACAGGTCTACCAGCATCTACCATTCATCGTTTGTTGAAGTGGAA
TGGAGAGGCGACTTTTGATCACAATGAAGACCACCCTTTAGACGGAAAGTTACTCATTGTAGATGAATTTTCGATGGTTG
ATATGTGGCTCGCTAACCAGTTGTTTCAATCGATACCTGCTGGGATGAAAGTGGTCCTTGTGGGAGACGAAGATCAGCTT
CCGTCAGTAGGTCCTGGGCAAGTTCTTGCAGACCTCATTCAAGCAGATGTGTTACCTACTGTGCAATTAACCGATATTTT
CCGCCAAGAAAACGGTTCTTCCATCGTAACGCTTGCTCATGAAATGAAAAAAGGAAAGCTACCTACAGATATTCGTGAGA
AAAAGGGAGATCGTTCATTTATTTCTTGTCGTACGGATCAAGTAAACGAGGCGATCCAAAAGGTGATTGGAAATGCTGTT
GCAAAAGGGTACCCTGCCAAAGACATTCAAGTATTGGCCCCCATGTACAGAGGGACGGCTGGGATTACCGCGCTTAATGA
ATCTTTGCAATCGTTACTTAATCCACCTGAAAAAGGAAAACGGGAAATAAAGTTTGGTGACATCGTGTTTCGTAGAGGCG
ATAAAGTACTTCAGCTCGTCAATAGACCTGAAGACAATGTGTATAACGGAGACATGGGGGAAGTAGTCGCTATCCATTTT
GCCAAAGAAACGGAACAAAAAACGGATATGATGACCGTTTCCTTTGATGGAGTAGAAGTGACGTACGAACGAAAAGAATT
GATTGAGATGACGCACGCGTACTGCTGTTCTATCCATAAATCGCAAGGTAGTGAATTTCCTATCGTTGTGCTCCCTGTTG
TAAGAGGTCATGCGCGTATGCTTCGGAGAAAGTTGTTGTACACGGCTGTCACACGAAGCAAGCAATTTCTTATTTTATGC
GGAGAGTTGGATGCATTTTCCCGCGGAGTCACGACAGAAGAGGATGTAGTGCGGCAAACATCTCTTGTGAAACGTCTTCG
TGACAGGTCATCACATAACGAAGCTCCCCTCGCTGCTGACGAATCGTTTGACTTGCAAGCGATCGATCCGATGATTGGAA
TGGAAAACGTTACGCCTTATGACTTTCTGAACGACGACGATACTACTGTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(336-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-244)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.711

99.747

0.556