Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HHK01_RS08710 Genome accession   NZ_CP052135
Coordinates   1782356..1783135 (-) Length   259 a.a.
NCBI ID   WP_170007421.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777356..1788135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS08685 fliG 1777392..1778393 (-) 1002 WP_170007416.1 flagellar motor switch protein FliG -
  HHK01_RS08690 fliF 1778407..1779996 (-) 1590 WP_170007417.1 flagellar basal-body MS-ring/collar protein FliF -
  HHK01_RS08695 fliE 1780085..1780387 (-) 303 WP_170007418.1 flagellar hook-basal body complex protein FliE -
  HHK01_RS08700 flgC 1780428..1780883 (-) 456 WP_170007419.1 flagellar basal body rod protein FlgC -
  HHK01_RS08705 flgB 1780886..1781278 (-) 393 WP_170007420.1 flagellar basal body rod protein FlgB -
  HHK01_RS08710 codY 1782356..1783135 (-) 780 WP_170007421.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HHK01_RS08715 hslU 1783184..1784593 (-) 1410 WP_170007422.1 HslU--HslV peptidase ATPase subunit -
  HHK01_RS08720 hslV 1784611..1785153 (-) 543 WP_170007423.1 ATP-dependent protease subunit HslV -
  HHK01_RS08725 xerC 1785200..1786096 (-) 897 WP_170007424.1 tyrosine recombinase XerC -
  HHK01_RS08730 trmFO 1786230..1787540 (-) 1311 WP_170007425.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28939.28 Da        Isoelectric Point: 5.2651

>NTDB_id=441442 HHK01_RS08710 WP_170007421.1 1782356..1783135(-) (codY) [Bacillus fonticola strain CS13]
MDLLSKTRKINALLQRSAGRPVNFKEMSETLCETIEANVFVVSRRGKLLGFAINQQIENERMKKMLEDRQFPEAYTHNLH
NVQVTSANLDVFSEHTAFPVENRDLFENGLTTIVPIIGGGERLGTLVLSRLQVDFSDDDLILAEYGSTVVGMEILREKTE
EIEEAARSKAVVQMAISSLSYSELEAIEHIFQELNGKEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLVELEKLKTP

Nucleotide


Download         Length: 780 bp        

>NTDB_id=441442 HHK01_RS08710 WP_170007421.1 1782356..1783135(-) (codY) [Bacillus fonticola strain CS13]
ATGGATTTGTTATCAAAAACTCGAAAAATTAACGCACTACTTCAACGCTCTGCAGGTAGACCTGTAAACTTCAAAGAAAT
GAGTGAAACGCTTTGTGAGACGATCGAAGCAAACGTGTTTGTCGTTTCGCGAAGAGGAAAACTGCTTGGCTTTGCCATTA
ACCAACAAATTGAAAACGAACGAATGAAAAAGATGCTAGAGGATCGTCAATTTCCTGAAGCATATACGCACAATTTGCAC
AATGTCCAAGTAACTTCAGCGAATTTAGATGTGTTCAGTGAGCATACAGCCTTTCCTGTAGAAAATCGCGACCTTTTTGA
AAATGGATTGACGACGATTGTTCCAATTATTGGAGGAGGAGAGCGCCTAGGAACTCTAGTCCTTTCTCGTCTTCAAGTTG
ATTTCTCTGACGATGATCTCATTTTAGCTGAGTATGGCTCCACTGTTGTTGGTATGGAGATTCTGAGAGAAAAAACAGAA
GAAATTGAAGAAGCAGCGCGCAGTAAGGCAGTGGTACAAATGGCCATCAGTTCTTTATCGTACAGTGAATTAGAAGCGAT
CGAGCATATTTTCCAAGAGCTTAACGGAAAAGAAGGCTTACTCGTTGCGTCAAAGATCGCTGATCGCGTGGGCATTACAC
GCTCTGTGATCGTGAACGCACTTCGGAAATTGGAAAGTGCGGGTGTCATTGAATCGCGGTCCCTTGGTATGAAGGGTACG
TACATTAAAGTATTAAACGATAAGTTCCTTGTAGAGCTTGAAAAACTAAAAACTCCTTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

83.333

99.614

0.83
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.559

95.367

0.444