Detailed information NTG0441320

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: H9K44_RS05535
• Genome accession: NZ_CP064035
• Coordinates: 1190309..1191598 (+)
• Length: 429 a.a.
• NCBI ID: WP_043043278.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain DLM1799
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1185309..1196598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9K44_RS05520 (H9K44_05530)	lrp	1185808..1186302 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
H9K44_RS05525 (H9K44_05535)	-	1186455..1189541 (+)	3087	WP_140061395.1	DNA translocase FtsK 4TM domain-containing protein	-
H9K44_RS05530 (H9K44_05540)	lolA	1189616..1190242 (+)	627	WP_074544414.1	outer membrane lipoprotein chaperone LolA	-
H9K44_RS05535 (H9K44_05545)	rarA	1190309..1191598 (+)	1290	WP_043043278.1	replication-associated recombination protein A	Machinery gene
H9K44_RS05540 (H9K44_05550)	serS	1191690..1192997 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
H9K44_RS05545 (H9K44_05555)	-	1193098..1194069 (+)	972	WP_232700533.1	hypothetical protein	-
H9K44_RS05550 (H9K44_05560)	-	1194069..1194782 (+)	714	WP_020903989.1	hypothetical protein	-
H9K44_RS05555 (H9K44_05565)	-	1194923..1195189 (+)	267	WP_015296513.1	DksA/TraR family C4-type zinc finger protein	-
H9K44_RS05560 (H9K44_05570)	bioA	1195259..1196539 (-)	1281	WP_141180278.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47621.81 Da
• Isoelectric Point: 5.8544

>NTDB_id=441320 H9K44_RS05535 WP_043043278.1 1190309..1191598(+) (rarA) [Vibrio parahaemolyticus strain DLM1799]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGNTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEENDQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=441320 H9K44_RS05535 WP_043043278.1 1190309..1191598(+) (rarA) [Vibrio parahaemolyticus strain DLM1799]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCGTCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGGCTGGGCAATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCTCTTAACTACCTTGAGCTTCTCTACGATATGGCAGAAGAGAATGATCAAGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGTGTTGGTCCAGCAGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (169-248)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385