Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   IRE31_RS06940 Genome accession   NZ_CP063829
Coordinates   1371969..1372691 (-) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 19A-ST320_99-176     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1366969..1377691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRE31_RS06930 (IRE31_06910) - 1369543..1370709 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  IRE31_RS06935 (IRE31_06915) - 1370717..1371811 (-) 1095 WP_000031964.1 cystathionine gamma-synthase -
  IRE31_RS06940 rcrP 1371969..1372691 (-) 723 WP_001010371.1 ABC transporter ATP-binding protein Regulator
  IRE31_RS06945 - 1372878..1373399 (-) 522 Protein_1376 ABC transporter transmembrane domain-containing protein -
  IRE31_RS06950 (IRE31_06925) - 1373417..1373650 (-) 234 WP_000769000.1 hypothetical protein -
  IRE31_RS06955 (IRE31_06930) amiA3 1373822..1375783 (-) 1962 WP_000748865.1 peptide ABC transporter substrate-binding protein Regulator
  IRE31_RS06960 (IRE31_06935) - 1375984..1377606 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=440985 IRE31_RS06940 WP_001010371.1 1371969..1372691(-) (rcrP) [Streptococcus pneumoniae strain 19A-ST320_99-176]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=440985 IRE31_RS06940 WP_001010371.1 1371969..1372691(-) (rcrP) [Streptococcus pneumoniae strain 19A-ST320_99-176]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363